genecluster.h

用分类算法挖掘数据表达模式中的平移变化和放缩变化

// GeneCluster.h: interface for the CGeneCluster class.
//
//////////////////////////////////////////////////////////////////////

#if !defined(AFX_GENECLUSTER_H__ADD2FDF3_9B47_4E26_A9EE_AFE77B2A2463__INCLUDED_)
#define AFX_GENECLUSTER_H__ADD2FDF3_9B47_4E26_A9EE_AFE77B2A2463__INCLUDED_

#if _MSC_VER > 1000
#pragma once
#endif // _MSC_VER > 1000

#include "Cluster.h"
#include "Gene.h"

class CGeneCluster  
{
public:
	void initialize(int nGene, int nCond, double **pValue, double dGama, double dEpsilon, int nMinG, int nMinC);
	CGeneCluster();
	virtual ~CGeneCluster();
	void MineCluster(CCluster *p);

private:
	void Destruct();
	void SetUp();
	BOOL PruneOne(CCluster *&pC);
	void SlideOverGene(CCluster *pC, int nCond, int *&pCandGene, int &nCandGeneSize);
	BOOL ValidateCoher(CGene *p1, CGene *p2, int * pCond);
	void ExplrSubsetGene(CCluster *pC, int nCond, int *&pCandGene, int &nCandGeneSize);
	BOOL PruneFur(CCluster *pC);
	void OutputClusterSet(CCluster *pC);
	BOOL CheckExist(CCluster *pC);
	BOOL PruneThr(CCluster *&pC);
	void ScanCandCond(CCluster *pC);
	void EstChainLen(CCluster *pC);
	BOOL PruneTwo(CCluster *pC);

public:
	CCluster * m_pCluster;	
	CGene * m_pGene;
	int m_nCandGeneSize;

private:
	int * m_pCandGene;						// store the sub set genes under condition ci
	int m_nMinG;
	int m_nMinC;
	int m_nCond;	
	int m_nGene;
	double m_dEpsilon;


};

#endif // !defined(AFX_GENECLUSTER_H__ADD2FDF3_9B47_4E26_A9EE_AFE77B2A2463__INCLUDED_)