discrete.xml

General Hidden Markov Model Library 一个通用的隐马尔科夫模型的C代码库

<?xml version="1.0" ?>
<graphml xmlns="http://graphml.graphdrawing.org/xmlns" xmlns:gd="gdnamespace" xmlns:hmm="http://www.ghmm.org/xml/">
  <key for="node" gd:type="HigherDiscreteProbDist" id="emissions"/>
  <hmm:class hmm:high="0" hmm:low="0">
    <map>
      <symbol code="0">C1</symbol>
    </map>
  </hmm:class>
  <hmm:alphabet hmm:high="3" hmm:id="0" hmm:low="0" hmm:type="discrete">
    <map>
      <symbol code="0">a</symbol>
      <symbol code="1">c</symbol>
      <symbol code="2">g</symbol>
      <symbol code="3">t</symbol>
    </map>
  </hmm:alphabet>
  <graph>
    <node id="0">
      <data key="label">0</data>
      <data key="class">-1</data>
      <data key="initial">1.0</data>
      <data key="ngeom">
        <pos x="100" y="50"/>
      </data>
      <data key="offset_x">1</data>
      <data key="offset_y">0</data>
      <data key="alphabet_id">0</data>
      <data key="kclasses">1</data>
      <data key="transitionfunction">-1</data>
      <data key="order">0</data>
      <data key="emissions">0.0, 0.5, 0.5, 0.0</data>
    </node>
    <node id="1">
      <data key="label">0</data>
      <data key="class">-1</data>
      <data key="initial">0.0</data>
      <data key="ngeom">
        <pos x="100" y="50"/>
      </data>
      <data key="offset_x">1</data>
      <data key="offset_y">0</data>
      <data key="alphabet_id">0</data>
      <data key="kclasses">1</data>
      <data key="transitionfunction">-1</data>
      <data key="order">0</data>
      <data key="emissions">0.1, 0.0, 0.8, 0.1</data>
    </node>
    <node id="2">
      <data key="label">0</data>
      <data key="class">-1</data>
      <data key="initial">0.0</data>
      <data key="ngeom">
        <pos x="100" y="50"/>
      </data>
      <data key="offset_x">1</data>
      <data key="offset_y">0</data>
      <data key="alphabet_id">0</data>
      <data key="kclasses">1</data>
      <data key="transitionfunction">-1</data>
      <data key="order">0</data>
      <data key="emissions">0.0, 0.0, 0.0, 0.0</data>
    </node>
    <edge source="0" target="0">
      <data key="prob">0.3</data>
    </edge>
    <edge source="0" target="1">
      <data key="prob">0.3</data>
    </edge>
    <edge source="0" target="2">
      <data key="prob">0.4</data>
    </edge>
    <edge source="1" target="0">
      <data key="prob">0.6</data>
    </edge>
    <edge source="1" target="1">
      <data key="prob">0.1</data>
    </edge>
    <edge source="1" target="2">
      <data key="prob">0.3</data>
    </edge>
    <edge source="2" target="0">
      <data key="prob">1.0</data>
    </edge>
  </graph>
</graphml>