embl

hmmer源程序

ID   XXPHA21    standard; DNA; PHG; 1635 BP.
XX
AC   X02501; M23775;
XX
SV   X02501.1
XX
DT   28-JAN-1986 (Rel. 08, Created)
DT   12-SEP-1993 (Rel. 36, Last updated, Version 3)
XX
DE   Bacteriophage 21 DNA for left end sequence with genes 1 and 2
XX
KW   overlapping genes.
XX
OS   Bacteriophage 21
OC   Viruses; dsDNA viruses, no RNA stage; Tailed phages; Siphoviridae.
XX
RN   [1]
RP   1-1635
RX   MEDLINE; 85237525.
RA   Miller G., Feiss M.;
RT   "Sequence of the left end of phage 21 DNA";
RL   J. Mol. Biol. 183:246-249(1985).
XX
DR   SWISS-PROT; P36693; TERL_BPP21.
DR   SWISS-PROT; P36694; TERS_BPP21.
XX
CC   Data kindly reviewed (06-MAR-1986) by M. Feiss
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1635
FT                   /db_xref="taxon:10743"
FT                   /organism="Bacteriophage 21"
FT   misc_feature    1..177
FT                   /note="bacteriophage 21 cos segment"
FT   misc_feature    complement(31..41)
FT                   /note="integrative host factor (IHF) binding  sequence 1"
FT   misc_feature    75..85
FT                   /note="IHF binding sequence 2"
FT   misc_feature    175..185
FT                   /note="IHF binding sequence 3"
FT   RBS             178..181
FT                   /note="pot. SD-sequence"
FT   CDS             189..737
FT                   /db_xref="SWISS-PROT:P36694"
FT                   /note="gp 1 (aa 1-182)"
FT                   /transl_table=11
FT                   /protein_id="CAA26342.1"
FT                   /translation="MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAM
FT                   AIQWYAQRETDIENEKLRKELDDLRAAAESDLQPGTIDYERYRLTKAQADAQELKNARE
FT                   DGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASNVAA
FT                   KAGENVGGWIDDFRRAEGS"
FT   RBS             699..702
FT                   /note="pot. SD-sequence"
FT   CDS             709..>1635
FT                   /db_xref="SWISS-PROT:P36693"
FT                   /note="gp 2 (aa 1-309)"
FT                   /transl_table=11
FT                   /protein_id="CAA26343.1"
FT                   /translation="MISDAQKAANAAGAIATGLLSLIIPVPLTTVQWANKHYYLPKESS
FT                   YTPGRWETLPFQVGIMNCMGNDLIRTVNLIKSARVGYTKMLLGVEAYFIEHKSRNSLLF
FT                   QPTDSAAEDFMKSHVEPTIRDVPALLELAPWFGRKHRDNTLTLKRFSSGVGFWCLGGAA
FT                   AKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKIKGSCQ
FT                   IEKAANESAHFMRFYVPCPHCGEEQYLKFGDDASPFGLKWEKNKPESVFYLCEHHGCVI
FT                   HQSELDQSNGRWICENTGMWTRDGLMFF"
XX
SQ   Sequence 1635 BP; 411 A; 356 C; 436 G; 432 T; 0 other;
     gggcggcgac ctcgcggttt ttcactattt atgaaaattt ttcagggaaa atcgtgtcgg        60
     tacttctcga atataacttt ttgttttttt taatattgca tccgtaaagg tccgacatga       120
     aagtgtccga aaatgccttt ttctggcgtt ttcatgtcgg gccttgtatt tgataatggg       180
     ttgttttcat gaaggttaat aaaaagaggc ttgccgaaat tttcaacgtg gacccgcgga       240
     cgattgaacg ctggcagtct cagggactcc cttgcgcctc caaaggtagt aagggcattg       300
     aatctgtatt tgatactgcc atggcaattc agtggtatgc gcagagggaa actgatatcg       360
     aaaacgaaaa gctccgcaaa gaactggacg atttgcgtgc ggcagcggag tcagatttac       420
     aacccggcac cattgactat gaacgctacc ggctcacaaa agcgcaggca gatgcgcagg       480
     aactgaaaaa tgcccgtgaa gacggagtag tgctggaaac tgaactgttt accttcattc       540
     tgcaacgtgt ggcacaggag atttcgggga tacttgtgcg tgtgccgttg acattacagc       600
     gtaaatatcc ggacatttca ccatcacacc ttgatgtggt gaaaactgaa atcgcgaaag       660
     cctccaatgt tgcagctaag gccggtgaaa acgtgggcgg gtggatcgat gatttcagac       720
     gcgcagaagg cagctaatgc agccggtgcg atagctacag ggcttttatc tctcattatt       780
     cctgttccac tgacgacagt tcagtgggcc aataaacatt attaccttcc taaagagtcg       840
     tcttataccc cggggcgatg ggaaacactg ccgtttcagg ttggcatcat gaactgtatg       900
     ggcaacgatc tgattcgcac ggttaacctg attaaatctg cccgtgttgg ttatacaaag       960
     atgttgctgg gagtggaggc ttattttatt gagcataaat cacgcaacag ccttcttttt      1020
     cagcccacgg actcagctgc tgaagatttt atgaaatctc atgttgagcc aacgataagg      1080
     gatgttcctg cattgctgga gctggctcca tggttcggaa gaaaacaccg cgataatacg      1140
     ctcaccctga agcgtttttc ctccggtgtg gggttctggt gtctgggtgg tgcggcagca      1200
     aaaaactacc gtgaaaaatc cgtggatgtg gtctgttatg acgagctttc ctcgttcgaa      1260
     ccggatgttg aaaaagaggg ttcgccaacc ctgctggggg ataaacgtat tgagggctct      1320
     gtatggccaa aatccattcg cggctcgacg ccaaaaatca aaggctcctg tcagatcgaa      1380
     aaagccgcta acgagtcggc acacttcatg cgtttttatg tgccctgtcc gcactgtggg      1440
     gaggagcagt atctgaaatt tggcgatgat gcctcgcctt tcggtcttaa gtgggagaag      1500
     aataagccag aaagtgtttt ctacctttgc gagcatcatg gctgtgtgat ccatcagtct      1560
     gagcttgacc agagtaacgg gcggtggatc tgtgaaaaca cgggcatgtg gacccgtgac      1620
     ggcctgatgt ttttc                                                       1635
//
ID   XXPHI80    standard; DNA; PHG; 233 BP.
XX
AC   X01639;
XX
SV   X01639.1
XX
DT   02-JUL-1986 (Rel. 09, Created)
DT   02-JUL-1986 (Rel. 09, Last updated, Version 1)
XX
DE   Bacteriophage phi 80 DNA-fragment with replication origin
XX
KW   origin of replication.
XX
OS   Bacteriophage phi-80
OC   Viruses; dsDNA viruses, no RNA stage; Tailed phages; Siphoviridae;
OC   Lambda phage group; bacteriophage lambda.
XX
RN   [1]
RP   1-233
RX   MEDLINE; 79135017.
RA   Grosschedl R., Hobom G.;
RT   "DNA sequences and structural homologies of the replication origins of
RT   lambdoid bacteriophages";
RL   Nature 277:621-627(1979).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..233
FT                   /db_xref="taxon:10713"
FT                   /organism="Bacteriophage phi-80"
FT   rep_origin      40..187
FT                   /note="origin of replication of phi 21"
FT   misc_feature    40..128
FT                   /note="pot. binding site for initiator protein"
FT   repeat_region   50..55
FT                   /note="multiple repeated sequence I"
FT   misc_feature    61..66
FT                   /note="inverted repeat of sequence I"
FT   repeat_region   71..76
FT                   /note="direct repeat of I"
FT   misc_feature    82..87
FT                   /note="inverted repeat of I"
FT   repeat_region   92..97
FT                   /note="direct repeat of I"
FT   misc_feature    103..108
FT                   /note="inverted repeat of I"
FT   repeat_region   113..117
FT                   /note="imp. direct repeat of I"
FT   misc_feature    129..155
FT                   /note="pot. region of replicational primer start site"
FT   misc_feature    156..187
FT                   /note="pot. binding site for initiator protein"
XX
SQ   Sequence 233 BP; 91 A; 51 C; 48 G; 43 T; 0 other;
     ggaccaaata aaaacatctc agaatggtgc atcctcaaaa cgagggaaaa tcccctaaaa        60
     cgagggataa aacatccctc aaattggggg attgctatcc ctcaaaacag ggggacacaa       120
     aagacactat tacaaaagaa aaaagaaaag attattcgtc agagaattct ggcgaatcct       180
     ctgaccagcc agaaaacgac ctttctgtgg tgaaaccgga tgctgcaatt cag              233
//