selex.1

hmmer源程序

#=ID r17
#=AC PF99999
#=DE Test of extended SELEX format
#=AU SRE, Tue Dec  1 19:17:48 1998
#=GA -1.0 -2.0
#=TC -3.0 -4.0
#=NC -5.0 -6.0

# Derived from r17.slx
#tag name       weight source   src acc #  from,to,olen description
#=SQ 28         1.0000 IDENT:   ACCESSION  1..29::29  Sequence one
#=SQ longname 102.0000 SWISS    NUMBER;    3..19::100 A long name
#=SQ 2          2.0000 OR       OR         0..0::0    two
#=SQ 3          3.0000 PIR      -          0..0::0    three
#=SQ 4          4.0000 OR       FOR        0..0::0    - means no data
#=SQ 5          5.0000 WHATEVER MISSING    0..0::0    -
#=SQ 6          6.0000 -        DATA       0..0::0    foo
#=SQ 7          7      -        -          0..0::0    bar
#=SQ 8          8.0000 -        -          0..0::0    baz
#=SQ 9          9.0000 -        -          0..0::0    a description of several words.
#=SQ 10        10.0000 -        -          0..0::0    -

#=RF        xxxxxxx xxxx xxxxxx
#=CS        >>>>+>> ^^^^ <<<<<<
28    gGAGUAAGAUAGC AUCA GCAUCUUGUUCC
#=SS  +++++>>>>>+>> ^^^^ <<<<<<<+++++
longname    GUUCACC AUCA GGGGAc
#=SS        >>>>+>> ^^^^ <<<<<<
2     AUGGAUGCGCACC AUCA GGGCGUaucuau
3           GAUCACC AUCA GGGauc
4           GGUCACC AUCA GGGauc
5           GGACACC AUCA GGGucu
6              CACC AUCA GGG
7           GAUCACC AUCA GGGauc
8            CUCACC AUCA GGGGG
9           AUGCACC AUCA GGGCAU
10           CUCACC AUCA GGGGG