genbank

hmmer源程序

GBPRI1.SEQ           Genetic Sequence Data Bank
                           15 August 2000

                NCBI-GenBank Flat File Release 119.0

                         Primate Sequences (Part 1)

    6395 loci,   170956138 bases, from     6395 reported sequences


LOCUS       AAB2MCG1      289 bp    DNA             PRI       06-JUL-1998
DEFINITION  Aotus azarai beta-2-microglobulin precursor, gene, exon 1.
ACCESSION   AF032092
VERSION     AF032092.1  GI:3265027
KEYWORDS    .
SEGMENT     1 of 2
SOURCE      Azara's night monkey.
  ORGANISM  Aotus azarai
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus.
REFERENCE   1  (bases 1 to 289)
  AUTHORS   Canavez,F.C., Ladasky,J.J., Muniz,J.A.C., Seuanez,H.N., Parham,P.
            and Cavanez,F.C.
  TITLE     beta2-Microglobulin in neotropical primates (Platyrrhini)
  JOURNAL   Immunogenetics 48 (2), 133-140 (1998)
  MEDLINE   98298008
REFERENCE   2  (bases 1 to 289)
  AUTHORS   Canavez,F.C., Ladasky,J.J., Seuanez,H.N. and Parham,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-1997) Structural Biology, Stanford University,
            Fairchild Building Campus West Dr. Room D-100, Stanford, CA
            94305-5126, USA
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Aotus azarai"
                     /db_xref="taxon:30591"
     exon            <134..200
                     /number=1
     sig_peptide     134..193
     intron          201..>289
                     /number=1
BASE COUNT       30 a     99 c     80 g     80 t
ORIGIN      
        1 gtccccgcgg gccttgtcct gattggctgt ccctgcgggc cttgtcctga ttggctgtgc
       61 ccgactccgt ataacataaa tagaggcgtc gagtcgcgcg ggcattactg cagcggacta
      121 cacttgggtc gagatggctc gcttcgtggt ggtggccctg ctcgtgctac tctctctgtc
      181 tggcctggag gctatccagc gtaagtctct cctcccgtcc ggcgctggtc cttcccctcc
      241 cgctcccacc ctctgtagcc gtctctgtgc tctctggttt cgttacctc
//

LOCUS       AAB2MCG2     1276 bp    DNA             PRI       06-JUL-1998
DEFINITION  Aotus azarai beta-2-microglobulin precursor, gene, exons 2 and 3
            and complete cds.
ACCESSION   AF032093 AF032094
VERSION     AF032093.1  GI:3287308
KEYWORDS    .
SEGMENT     2 of 2
SOURCE      Azara's night monkey.
  ORGANISM  Aotus azarai
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Canavez,F.C., Ladasky,J.J., Muniz,J.A.C., Seuanez,H.N., Parham,P.
            and Cavanez,F.C.
  TITLE     beta2-Microglobulin in neotropical primates (Platyrrhini)
  JOURNAL   Immunogenetics 48 (2), 133-140 (1998)
  MEDLINE   98298008
REFERENCE   2  (bases 1 to 1276)
  AUTHORS   Canavez,F.C., Ladasky,J.J., Seuanez,H.N. and Parham,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-1997) Structural Biology, Stanford University,
            Fairchild Building Campus West Dr. Room D-100, Stanford, CA
            94305-5126, USA
COMMENT     On Jul 2, 1998 this sequence version replaced gi:3265029
            gi:3265028.
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Aotus azarai"
                     /db_xref="taxon:30591"
     mRNA            join(AF032092.1:<134..200,66..344,1023..>1050)
                     /product="beta-2-microglobulin precursor"
     CDS             join(AF032092.1:134..200,66..344,1023..1036)
                     /codon_start=1
                     /product="beta-2-microglobulin precursor"
                     /protein_id="AAC52107.1"
                     /db_xref="GI:3289965"
                     /translation="MARFVVVALLVLLSLSGLEAIQRXPKIQVYSRHPAENGKPNFLN
                     CYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYLLYYTEFTPNEKDEYACRV
                     SHVTLSTPKTVKWDRNM"
     mat_peptide     join(AF032092.1:194..200,66..344,1023..1033)
                     /product="beta-2-microglobulin"
     intron          <1..65
                     /number=1
     variation       3
                     /note="allele 1"
                     /replace="g"
     exon            66..344
                     /number=2
     intron          345..1022
                     /number=2
     exon            1023..1050
                     /number=3
     intron          1051..>1276
                     /number=3
BASE COUNT      353 a    253 c    269 g    400 t      1 others
ORIGIN      
        1 caagttatcc gtaattgaaa taccctggta attaatattc atttgtcttt tcctgatttt
       61 ttcaggtrct ccaaagattc aggtttactc acgtcatccg gcagagaatg gaaagccaaa
      121 ttttctgaat tgctatgtgt ctgggtttca tccgtccgac attgaagttg acttactgaa
      181 gaatggaaag aaaattgaaa aagtggagca ttcagacttg tctttcagca aggactggtc
      241 tttctatctc ttgtactaca ccgagtttac ccccaatgaa aaagatgagt atgcctgccg
      301 tgtgagccat gtgactttat caacacccaa gacagtaaag tggggtaagt cttacgttct
      361 tttgtaggct gctgaaagtt gtgtatgggt agtcatgtca taaagctgct ttgatataaa
      421 aaaaattcgt ctatggccat actgccctga atgagtccca tcccgtctga taaaaaaaaa
      481 tcttcatatt gggattgtca gggaatgtgc ttaaagatca gattagagac aacggctgag
      541 agagcgctgc acagcattct tctgaaccag cagtttccct gcagctgagc agggagcagc
      601 agcagcagtt gcacaaatac atatgcactc ctaacacttc ttacctactg acttcctcag
      661 ctttcgtggc agctttaggt atatttagca ctaatgaaca tcaggaaggt ataggccttt
      721 ctttgtaaat ccttctatcc tagcatccta taatcctgga ctcctccagt actctctggc
      781 tggattggta tctgaggcta gtaggtgggg cttgttcctg ctgggtagct ccaaacaagg
      841 tattcatgga taggaacagc agcctatttt gccagcctta tttcttaata gttttagaaa
      901 tctgttagta cgtggtgttt tttgttttgt tttgttttaa cacagtgtaa acaaaaagta
      961 catgtatttt aaaagtaaaa cttaatgtct tcctttttct ttctccactg tctttttcat
     1021 agatcgaaac atgtaaccag catcatggag gtaagttctt gaccttaatt aaatgttttt
     1081 tgtttcactg gggactattt atagacagcc ctaacatgat aaccctcact atgtggagaa
     1141 cattgacaga gtagcatttt agcaggcaaa gaggaatcct atagggttac attccctttt
     1201 cctgtggagt ggcatgaaaa aggtatgtgg ccccagctgt ggccacatta ctgactctac
     1261 agggagggca aaggaa
//
LOCUS       AACCOSIV1     168 bp    DNA             PRI       26-JAN-1998
DEFINITION  Aotus azarai cytochrome c oxidase subunit IV gene, exon 3.
ACCESSION   AF042765
VERSION     AF042765.1  GI:2809514
KEYWORDS    .
SEGMENT     1 of 3
SOURCE      Azara's night monkey.
  ORGANISM  Aotus azarai
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus.
REFERENCE   1  (bases 1 to 168)
  AUTHORS   Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I.
  TITLE     Molecular evolution of cytochrome c oxidase subunit IV: evidence
            for positive selection in simian primates
  JOURNAL   J. Mol. Evol. 44 (5), 477-491 (1997)
  MEDLINE   97277139
REFERENCE   2  (bases 1 to 168)
  AUTHORS   Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-1998) CMMG, Wayne State University, 540 E.
            Canfield, Detroit, MI 48201, USA
FEATURES             Location/Qualifiers
     source          1..168
                     /organism="Aotus azarai"
                     /db_xref="taxon:30591"
     exon            1..168
                     /number=3
BASE COUNT       40 a     42 c     54 g     32 t
ORIGIN      
        1 gaagtgttgt gaagagcgaa gactatgcgc tcccaagtta tgtggatcgg cgtgactatc
       61 ccttgcccga cgtggcccat gtcaggcacc tgtcggccag ccagaaggcc ttgaaggaga
      121 aggagaaggc ctcctggagc agcctctcca tggatgagaa agtcgagt
//

LOCUS       AACCOSIV2     132 bp    DNA             PRI       26-JAN-1998
DEFINITION  Aotus azarai cytochrome c oxidase subunit IV gene, exon 4.
ACCESSION   AF042766
VERSION     AF042766.1  GI:2809515
KEYWORDS    .
SEGMENT     2 of 3
SOURCE      Azara's night monkey.
  ORGANISM  Aotus azarai
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus.
REFERENCE   1  (bases 1 to 132)
  AUTHORS   Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I.
  TITLE     Molecular evolution of cytochrome c oxidase subunit IV: evidence
            for positive selection in simian primates
  JOURNAL   J. Mol. Evol. 44 (5), 477-491 (1997)
  MEDLINE   97277139
REFERENCE   2  (bases 1 to 132)
  AUTHORS   Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-1998) CMMG, Wayne State University, 540 E.
            Canfield, Detroit, MI 48201, USA
FEATURES             Location/Qualifiers
     source          1..132
                     /organism="Aotus azarai"
                     /db_xref="taxon:30591"
     exon            1..132
                     /number=4
BASE COUNT       30 a     25 c     38 g     39 t
ORIGIN      
        1 tgtatcgtat tcagttcaag gagagctttg ctgagatgaa caggggctcc aatgagtgga
       61 agacggttgt gggtgctgcc atgttcttca tcggcttcac agcaattctt atcatcttgg
      121 agaagcgcta tg
//

LOCUS       AACCOSIV3     137 bp    DNA             PRI       26-JAN-1998
DEFINITION  Aotus azarai cytochrome c oxidase subunit IV gene, exon 5; and
            partial cds.
ACCESSION   AF042767
VERSION     AF042767.1  GI:2809516
KEYWORDS    .
SEGMENT     3 of 3
SOURCE      Azara's night monkey.
  ORGANISM  Aotus azarai
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus.
REFERENCE   1  (bases 1 to 137)
  AUTHORS   Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I.
  TITLE     Molecular evolution of cytochrome c oxidase subunit IV: evidence
            for positive selection in simian primates
  JOURNAL   J. Mol. Evol. 44 (5), 477-491 (1997)
  MEDLINE   97277139
REFERENCE   2  (bases 1 to 137)
  AUTHORS   Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-1998) CMMG, Wayne State University, 540 E.
            Canfield, Detroit, MI 48201, USA
FEATURES             Location/Qualifiers
     source          1..137
                     /organism="Aotus azarai"
                     /db_xref="taxon:30591"
     mRNA            join(AF042765.1:<1..168,AF042766.1:1..132,1..>137)
                     /product="cytochrome c oxidase subunit IV"
     CDS             join(AF042765.1:<1..168,AF042766.1:1..132,1..137)
                     /codon_start=3
                     /product="cytochrome c oxidase subunit IV"
                     /protein_id="AAB97755.1"
                     /db_xref="GI:2809518"
                     /translation="SVVKSEDYALPSYVDRRDYPLPDVAHVRHLSASQKALKEKEKAS
                     WSSLSMDEKVELYRIQFKESFAEMNRGSNEWKTVVGAAMFFIGFTAILIILEKRYVYG
                     PLPHTFDKEWVAMQTKRMLDLKVNPVDGLASKWDYDKKEWKK"
     exon            1..137
                     /number=5
BASE COUNT       36 a     36 c     43 g     22 t
ORIGIN      
        1 tgtacggccc cctcccgcac acctttgaca aagagtgggt ggccatgcag accaagagga
       61 tgctggacct gaaggtgaac cctgtcgatg gcctcgcctc caagtgggac tacgacaaga
      121 aggagtggaa gaagtga
//
LOCUS       AAU18601     1771 bp    DNA             PRI       17-JAN-1997
DEFINITION  Aotus azarae interphotoreceptor retinoid-binding protein (IRBP)
            gene, intron 1, complete sequence.
ACCESSION   U18601
VERSION     U18601.1  GI:624187
KEYWORDS    .
SOURCE      Azara's night monkey.
  ORGANISM  Aotus azarai
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Harada,M.L., Schneider,H., Schneider,M.P., Sampaio,I.,
            Czelusniak,J. and Goodman,M.
  TITLE     DNA evidence on the phylogenetic systematics of New World monkeys:
            support for the sister-grouping of Cebus and Saimiri from two
            unlinked nuclear genes
  JOURNAL   Mol. Phylogenet. Evol. 4 (3), 331-349 (1995)
  MEDLINE   96111507
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Harada,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-1994) Universidade Federal do Para, Departamento
            de Genetica, Campus Universitario do Guama, Belem, Para, 66075-900,
            Brazil
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Aotus azarai"
                     /db_xref="taxon:30591"
                     /tissue_type="lymphocytes"
                     /dev_stage="adult"
     gene            1..1771
                     /gene="IRBP"
     intron          1..1771
                     /gene="IRBP"
                     /note="interphotoreceptor retinoid-binding protein"
                     /number=1
BASE COUNT      384 a    443 c    533 g    411 t
ORIGIN      
        1 gtgagaccca agggagacct ggccgggccc agtcctggga gtgagttgac ctgtcgtttg
       61 cacatgcagg gctctgtgca caatgcgtga caatggcttt tagatttgtt ctcatgctta
      121 agttgtggcc agttgagtcc tttcctcttt ccatccactg ttccatccac tctctgggac
      181 cctggtgctg ctgtagaacc tccgtagaac attcatgtta ggttggtgtg aaagtacttt
      241 taattgcaaa acccacaatt acttttgcat caacctcacg ggaagccagt ttggaagcct
      301 cgggatagac agagtttcag ccttggctgg gtggaaggtg agcgttggcg gggcttctca
      361 tcgtcagtgt gggagaagag gccaacatgt ggcagaggtg gcggtgggct tcaccgcgtg
      421 ccccaccgca ggccgagagc tccgcccggg cagcactcac tccacgctgt tctcctacct
      481 gtggctttgc tgcattgtca cagttgggca gggcagcatg tgtcatgaat cccttgcaag
      541 gagggtctga gactggggtt gggtgcaggc agtttgtctg ggaggtggtt gctgaagcag
      601 gtgtgaagga gggagcaggg agagtgagat aggaaggtga caggcaggtc cctcaaagct
      661 gttctgctga agccaggacg ctgacaagtg tggggatgct cccaggcaca gttctctgcg
      721 ggcgggcccc agggctcctg tcccgctttg gccaagagtt gccctgagga cataactcgg
      781 ggtggggcag gctcccctct cttggagaag gcctgagctg agggtggaaa gacaggatgg
      841 tgctgtggga gagcctgtca gtggggccag gtgcagctga aatcagaggg ggctgagagt
      901 gccaacggca tctgttacag aattctcatc cccattttgc ataactgagg cccagagagg
      961 tgcagagggg agtggcctgg agccagagag ctgtgactga aggcagggca gggcctggag
     1021 ggcagtgtct ctgtcagcac aggctccttg ccccagtcca gctcaccaag tcctgccgcc
     1081 ctcccgcagc cttagagagg gaggaagagg tgcatccaca tggaagtagc ctgtgctagg
     1141 ctttcagaat acccagtttc caaattaatt gcttcttcct ttctggtata gccaaggttc
     1201 acaatttgga gtcagatgtg gattcagatg ctggctccac cacttattga ctgtgtaacc
     1261 tgggactagt tacttaatct cactgtgctt cagtttttcc gtggaaaaga tggggaccat
     1321 gttatctcct gtacaggtgg ctgtgaggat gacgataagc tctgcaaagt gcttagtaca
     1381 gggccaggca cctgttaaag gtaactaaca tcttccaatc ctgccccagt ggaggggaag
     1441 ataagcttag agatgttggg aagtatctgg cgaggttgga cgaatcagag aggagaccat
     1501 tcctgggcct tccagctctg aacaccagag cagacaggag catcctctgc aaggaggctt
     1561 cccatggatc acacatgtcc cagtggcatg tcacatccca gacatgccac tgggaaagtc
     1621 ccaggtgcct actgactcct tcagaaatgt cagttcctgt cccatgccct taatatttcc
     1681 catgacataa aggcgatcca tggcacctgc tttcctgggc tcgaaaaccg gctgccctcc
     1741 tgacactgag caggacctcc aactcttgca g
//