fn3.slx

hmmer源程序

# ID   fn3
# AC   PF00041
# DE   Fibronectin type III domain
# AU   Sonnhammer ELL
# AL   HMM_simulated_annealing
# AM   hmma -qR
# SE   Swissprot_feature_table
# GA   Bic_raw 18 hmmls 20
# CC   There is no clear separation between signal and noise.
# DR   PROSITE; PDOC00214;
# DR   SCOP; 1ttf; sf;
# RN   [1]
# RA   Bazan J.F.
# RL   PNAS USA 87:6934-6938(1990).
# RN   [2]
# RA   Little E., Bork P., Doolittle R.
# RL   J. Mol. Evol. 39:631-643(1994).
# RN   [3]
# RA   Kornblihtt A.R., et al.
# RL   EMBO J. 4:1755-1759(1985).
# SQ   109
7LES_DROME/1799-1891 P.SPP.RNFSVRVL..SPRELEVSWLPPEq...LRSESVYYTLHW...QQ
7LES_DROVI/1917-1997 S.YAPlPPLQLIEL..NAYGMTLAWPGT......PDALSSLTLEC...QS
APU_THETY/928-1009   A.PQPiTDLKAVS...GNGKVDLSWSVV.......DKAVSYNI.YR...S
APU_THETY/1165-1248  P.TAP.V.LQQPGI..ESSRVTLNWSPSA....DDVAIFGYEIYK...SS
AXO1_CHICK/602-692   PpGPP.GGVVVRDI..GDTTVQLSWSRGFd...NHSPIARYSIEAR...T
AXO1_CHICK/807-896   PkVAP.FRVTAKAV..LSSEMDVSWEPVEqg.dMTGVLLGYEIRY...WK
CAML_HUMAN/812-907   P.QAI.PELEGIEIl.NSSAVLVKWRPVDla.qVKGHLRGYNVTY...WR
CHI1_BACCI/465-542   P.SVP.GNARSTGV..TANSVTLAWNAST....DNVGVTGYNV.YN....
CHIT_STRLI/142-219   P.SAP.GTPTASNI..TDTSVKLSWSAAT....DDKGVKNYDV.LR....
CHIX_STROI/169-240   P.PAPpTGLRTGSV..TATSVALSWSPV.......TGATGYAV.YR....
CONT_CHICK/799-884   PtEVP.TDVSVKVL..SSSEISVSWHHVT.....EKSVEGYQIRY...WA
CPSF_CHICK/630-716   P.DPP.QSVRVTSV..GEDWAVLSWEAPPf..dGGMPITGYLMER...KK
CPSF_CHICK/923-1008  P.GPP.QAVRVMEV..WGSNALLQWEPPKd..dGNAEISGYTVQK...AD
ECK_HUMAN/329-420    P.SAP.HYLTAVGM..GA.KVELRWTPPQd..sGGREDIVYSVTCEqcWP
ECK_HUMAN/436-519    Q.TEP.PKVRLEGR..STTSLSVSWSIPPp...QQSRVWKYEVTYR...K
EPH1_HUMAN/333-435   P.SAP.RNLSFSA...SGTQLSLRWEPPAd..tGGRQDVRYSVRCS..QC
EPH3_CHICK/333-429   P.SAP.QAV.ISSV..NETSLMLEWTPPRd..sGGREDLVYNIIC...KS
EPH3_CHICK/444-528   P.SAV.SIMHQVSR..TVDSITLSWSQPDq...PNGVILDYELQY...YE
ETK1_CHICK/325-421   P.SAP.RNV.ISNI..NETSVILDWSWPLd..tGGRKDVTFNIIC...KK
FAS2_SCHAM/530-616   P.SAV.LQVKMDVM..TATTVTFKFFGPGn..dGGLPTKNYAVQY...KQ
FAS2_SCHAM/642-735   T.SGT.ENEVVVSP..YPNRYELRWQVPAd...NGEPITHYSVKS...CP
FINC_BOVIN/577-660   T.SGP.VQVIITETpsQPNSHPIQWSAPE.....SSHISKYILRW...KP
FINC_BOVIN/689-768   P.VVA.TSESVTEI..TASSFVVSWVSA......SDTVSGFRVEY...EL
FINC_BOVIN/780-858   P.DAP.PDPTVDQV..DDTSIVVRWSRP......RAPITGYRIVY...SP
FINC_BOVIN/875-955   KvPPP.RDLQFVEV..TDVKITIMWTPP......ESPVTGYRVDV...IP
FINC_BOVIN/1142-1225 PlSPP.TNLHLEANp.DTGVLTVSWERST.....TPDITGYRITT...TP
FINC_BOVIN/1236-1316 V.PPP.TDLRFTNV..GPDTMRVTWAPPS.....SIELTNLLVRY...SP
FINC_BOVIN/1327-1406 L.DSP.SGIDFSDI..TANSFTVHWIAP......RATITGYRIRHH...P
FINC_BOVIN/1417-1499 S.DVP.RDLEVIAA..TPTSLLISWDAP......AVTVRYYRITY...GE
FINC_BOVIN/1511-1590 I.DKP.SQMQVTDV..QDNSISVRWLPS......SSPVTGYRVTT...AP
FINC_BOVIN/1601-1680 I.PAP.TNLKFTQV..TPTSLTAQWTAP......NVQLTGYRVRV...TP
FINC_BOVIN/1693-1771 V.SPP.RRARVTDA..TETTITISWRTK......TETITGFQVDA...IP
FINC_BOVIN/1782-1861 I.DAP.SNLRFLAT..TPNSLLVSWQPP......RARITGYIIKY...EK
FINC_CHICK/551-630   I.DRP.KGLTFTEV..DVDSIKIAWESP......QGQVTRYRVTY...SS
FINC_RAT/1266-1346   V.PQL.TDLSFVDI..TDSSIGLRWTPLN.....SSTIIGYRITV...VA
GUNB_CELFI/651-733   P.TTP.GTPVATGV..TTVGASLSWAASTd...AGSGVAGYEL.YR...V
IL7R_HUMAN/129-221   P.EAP.FDLSVIYRe.GANDFVVTFNTSHlq.kKYVKVLMHDVAYR..QE
ITB4_HUMAN/1127-1208 L.GAP.QNPNAKAA..GSRKIHFNWLPP......SGKPMGYRVKY...WI
ITB4_HUMAN/1220-1310 P.SEP.GRLAFNVV..SSTVTQLSWAEPAe...TNGEITAYEVCY...GL
ITB4_HUMAN/1581-1665 P.DTP.TRLVFSAL..GPTSLRVSWQEPR....CERPLQGYSVEY...QL
ITB4_HUMAN/1694-1781 P.SAP.GPLVFTAL..SPDSLQLSWERPRr...PNGDIVGYLVTC...EM
KALM_CHICK/178-271   P.LKPrKELKFIEL..QSGDLEVKWSSKFn...ISIEPVIYVVQRR..WN
KALM_CHICK/544-642   L.AKP.ENLSASFIv.QEGNITGHFSWKIskavLHQPMTGFQVTW...AE
KMLC_CHICK/60-145    P.DPPaGTPCASDI..RSSSLTLSWYGSSy..dGGSAVQSYTVEI...WN
LAR_DROME/322-404    P.TAP.TDVQISEV..TATSVRLEWSYK.....GPEDLQYYVIQY...KP
LAR_DROME/417-503    E.SAP.RNVQVRTL..SSSTMVITWEPPEt...PNGQVTGYKV.Y...YT
LAR_DROME/515-598    P.SQP.SNFRATDI..GETAVTLQWTKPTh...SSENIVHYELYW...ND
LAR_DROME/709-800    P.GDP.QDVKATPL..NSTSIHVSWKPPLek.dRNGIIRGYHIHA...QE
LAR_DROME/909-995    PgGPP.SNITIRFQ..TPDVLCVTWDPPTre.hRNGIITRYDVQFH..KK
MPSF_CHICK/371-457   P.GAP.MDVKCHDA..NRDYVIVTWKPPNt..tSQNPVIGYFVDK...CE
MPSF_CHICK/499-585   P.GPP.TNVHASEI..SKTYVVLSWDPPVp...RGREPLTYFIEK...SM
MPSF_CHICK/600-684   P.SAP.GRVVATRN..TKTSVVVQWDKPK....HEENLYGYYIDY...SV
MPSF_CHICK/699-785   P.SYP.HGITLLNC..DGHSMTLGWKAPKy..sGGSPILGYYIDKR...E
MPSF_CHICK/801-887   P.GPA.YDLTVCEV..RNTSLVLLWKAPVy..eGKSPITGYLVDY...KE
NCA1_BOVIN/509-597   P.SSP.SIDQVEP...YSSTAQVQFDEPEa..tGGVPILKYKAEWR...A
NCA1_BOVIN/610-691   P.SAP.KLEGQMGE..DGNSIKVKLIKQDd...GGSPIRHYLVKYR...A
NGCA_CHICK/700-794   PeRNP.GGVHGEGN..ETGNLVITWEPLPpq.aWNAPWARYRVQWR...P
NRCA_CHICK/623-709   P.NPP.LDLELTGQ..LERSIELSWVPGEe...NNSPITNFVIEY...ED
NRCA_CHICK/726-810   ....P.SNVQGIGS..EPDNLVITWESLKgf.qSNGPGLQYKVSWR..QK
NRCA_CHICK/928-1014  P.SPP.SFLKITNP..TLDSLTLEWGSPTh...PNGVLTSYILKF...QP
NRG_DROME/717-799    ....P.DNVVGQGT..EPNNLVISWTPMPei.eHNAPNFHYYVSW...K.
NRG_DROME/815-905    PlDAP.TNFTMRQIt.SSTSGYMAWTPVSee.sVRGHFKGYKIQT...WT
NRG_DROME/917-1007   P.SPV.QGLDAYPL..GSSAFMLHWKKPLy...PNGKLTGYKIYY...EE
PHB_ALCFA/344-418    G.SAP.TGLAVTAT..TSTSVSLSWNAV.......ANASSYGV.YR....
PTP1_DROME/123-205   P.DPP.SNLSVQVR..SGKNAIILWSPPT.....QGSYTAFKIKV...LG
PTP1_DROME/217-301   P.NTP.GKFIVWFR..NETTLLVLWQPPY....PAGIYTHYKVSI...EP
PTP1_DROME/312-394   P.LRP.LNVTFDRDfiTSNSFRVLWEAPK....GISEFDKYQVSV...AT
PTP1_DROME/405-485   P.LPV.RNLRSINDd.KTNTMIITWEADP.....ASTQDEYRIVYHe.LE
PTP1_DROME/583-661   P.NPP.RNMTIETV..RSNSVLVHWSPPE.....SGEFTEYSIRYR...T
PTP1_DROME/864-944   P.EPI.TQLHATNI..TDTEISLRWDLP......KGEYNDFDIAY...LT
PTP1_DROME/958-1044  P.GRV.ERFHPTDV..QPSEINFEWSLPSs..eANGVIRQFSIAY...TN
PTP6_DROME/236-321   V.PQV.SIDFAKAV..GANKIYLNWTVND....GNDPIQKFFITL...QE
PTP6_DROME/332-425   Y.DPI.FIPKVETTgsTASTITIGWNPPPp..dLIDYIQYYELIV...SE
PTP9_DROME/171-259   P.SKP.QNLTILDV..SANSITMSWHPPKn...QNGAIAGYHVFH...IH
PTPB_HUMAN/22-103    AePER.CNFTLAESkaSSHSVSIQWRIL.......GSPCNFSLIY...SS
PTPB_HUMAN/112-192   P.PAR.FGVSKEKT..TSTGLHVWWTPS......SGKVTSYEVQL...FD
PTPB_HUMAN/467-543   P.LAV.LQLRVKHA..NETSLSIMWQTP......VAEWEKYIISL...AD
PTPB_HUMAN/554-632   P.AQV.TDLHVANQg.MTSSLFTNWTQA......QGDVEFYQVLL...IH
PTPB_HUMAN/643-725   P.SSV.SGVTVNNSg.RNDYLSVSWLVA......PGDVDNYEVTL...SH
PTPB_HUMAN/731-808   P.DKV.QGVSVSNSa.RSDYLRVSWVHA......TGDFDHYEVTI...KN
PTPB_HUMAN/907-984   P.SAV.KNIHISPNg.ATDSLTVNWTPG......GGDVDSYTVSA...FR
PTPB_HUMAN/995-1074  P.ASV.QGVIADNAy.SSYSLIVSWQKA......AGVAERYDILL...LT
PTPB_HUMAN/1085-1162 P.AAV.TDLRITEN..STRHLSFRWTAS......EGELSWYNIFL...YN
PTPB_HUMAN/1173-1250 P.ASV.SHLRGSNRn.TTDSLWFNWSPA......SGDFDFYELIL...YN
PTPB_HUMAN/1261-1344 P.SPP.SLMSFADI..ANTSLAITWKGPP....DWTDYNDFELQW...LP
PTPB_HUMAN/1355-1434 P.DKI.QNLHCRPQ..NSTAIACSWIPP......DSDFDGYSIECR...K
PTPK_MOUSE/290-376   P.PRPiAPPQLLGV..GPTYLLIQLNANSi..iGDGPIILKEVEYR...M
PTPZ_HUMAN/312-401   S.SEP.ENVQADPE..NYTSLLVTWERPRv..vYDTMIEKFAVLY...QQ
SEK_MOUSE/441-525    P.SSI.ALVQAKEV..TRYSVALAWLEPDr...PNGVILEYEVKY...YE
TENA_CHICK/593-671   V.SPP.TELTVTNV..TDKTVNLEWKHE.......NLVNEYLVTY...VP
TENA_CHICK/682-767   L.PAP.EGLKFKSV..RETSVQVEWDPL......SISFDGWELVFRnmQK
TENA_CHICK/774-853   L.DAP.SQIEAKDV..TDTTALITWSKP......LAEIEGIELTY...GP
TENA_CHICK/864-945   L.DAP.RNLKRVSQ..TDNSITLEWKNS......HANIDNYRIKF...AP
TENA_CHICK/956-1033  L.DNP.KDLEVSDP..TETTLSLRWRRP......VAKFDRYRLTY...VS
TENA_CHICK/1045-1124 E.PEL.GNLSVSET..GWDGFQLTWTAA......DGAYENFVIQV...QQ
TENA_CHICK/1136-1215 H.PEV.GELTVSDI..TPESFNLSWTTT......NGDFDAFTIEI...ID
TENA_CHICK/1227-1306 E.PEV.DNLLVSDA..TPDGFRLSWTAD......DGVFDSFVLKIR..DT
TENA_CHICK/1317-1395 V.GSP.KGISFSDI..TENSATVSWTPP......RSRVDSYRVSY...VP
TENA_CHICK/1406-1483 L.DSP.SGLVVMNI..TDSEALATWQPA......IAAVDNYIVSY...SS
TENA_CHICK/1494-1571 L.DAP.KDLSATEV..QSETAVITWRPP......RAPVTDYLLTY...ES
TENA_HUMAN/1254-1334 E.VPDmGNLTVTEV..SWDALRLNWTTP......DGTYDQFTIQV...QE
TENA_HUMAN/1528-1607 L.PLL.ENLTISDI..NPYGFTVSWMAS......ENAFDSFLVTV...VD
TIE1_HUMAN/446-533   P.PVPlAAPRLLTK..QSRQLVVSPLVSFs...GDGPISTVRLHYR..PQ
TIE1_HUMAN/545-632   PlLQP.WLEGWHVE..GTDRLRVSWSLPLv..pGPLVGDGFLLRL...WD
TIE1_HUMAN/644-729   P.PAP.RHLHAQAL..SDSEIQLTWKHPEa...LPGPISKYVVEV...QV
TIE2_HUMAN/444-529   L.PKPlNAPNVIDT..GHNFAVINISSEPy..fGDGPIKSKKLLY...KP
TIE2_HUMAN/543-626   L.PPP.RGLNLLPK..SQTTLNLTWQPIFp...SSEDDFYVEVERR...S
TIE2_HUMAN/639-724   P.PQP.ENIKISNI..THSSAVISWTILD.....GYSISSITIRY...KV
UFO_HUMAN/327-411    L.GPP.ENISATR...NGSQAFVHWQEPRa..pLQGTLLGYRLAY...QG

7LES_DROME/1799-1891 ELDGEnvqd..rrewEAHER...RLET....AG..THRLTGIKPGSGYSL
7LES_DROVI/1917-1997 LREQ............LQFN...VAGN....HT..QMRLAPLQPKTRYSC
APU_THETY/928-1009   TVKGG..........LYEKI...ASNV....TQi.TYTDTEVTNGLKYVY
APU_THETY/1165-1248  SETGPf.........IKIAT...VSDS....VY..NYVDTDVVNGNVYYY
AXO1_CHICK/602-692   LLSNKwkq.....mrTNPVN...IEGN....AE..TAQVVNLIPWMDYEF
AXO1_CHICK/807-896   DGDKEea.......aDRVRT...AGLV....T...SAHVTGLNPNTKYHV
CAML_HUMAN/812-907   EGSQRkhsk..rhihKDHVV...VPAN....TT..SVILSGLRPYSSYHL
CHI1_BACCI/465-542   .GAN............LATS...VTGT....T....ATISGLTAGTSYTF
CHIT_STRLI/142-219   .DGA............KVAT...VTGT....T....YTDNGLTKGTAYSY
CHIX_STROI/169-240   .DGV............KVAT...ASGT....S....ATVTGLTPDTAYAF
CONT_CHICK/799-884   AHDKEa........aAQRVQ...VSNQ....EY..STKLENLKPNTRYHI
CPSF_CHICK/630-716   KGSMRw........mKLNFE...VFPD....T...TYESTKMIEGVFYEM
CPSF_CHICK/923-1008  TRTME..........WFTVL...EHSR....PT..RCTVSELVMGNEYRF
ECK_HUMAN/329-420    E.SGEcgp....ceaSVRYS...EPPHgl.tRT..SVTVSDLEPHMNYTF
ECK_HUMAN/436-519    KGDS............NSYN...VRRT....EGf.SVTLDDLAPDTTYLV
EPH1_HUMAN/333-435   QGTAQdggpcqpcgvGVHFSpgaRGLT....TP..AVHVNGLEPYANYTF
EPH3_CHICK/333-429   CGSGRgact...rcgDNVQF...APRQlgltEP..RIYISDLLAHTQYTF
EPH3_CHICK/444-528   KNLSE..........LNSTA...VKSP....TN..TVTVQNLKAGTIYVF
ETK1_CHICK/325-421   CGGSSkice...pcsDNVRF...LPRQtg.lTNt.TVTVVDLLAHTNYTF
FAS2_SCHAM/530-616   DSQGW..........EDALN...RTWP....VDs.PYILENLKPQTRYNF
FAS2_SCHAM/642-735   VEKYDtewrl.lpypCQEHK...LEGQ....AT..TFQLESLQPDTHYKV
FINC_BOVIN/577-660   KNSPDr.........WKEAT...IPGH....LN..SYTIKGLRPGVVYEG
FINC_BOVIN/689-768   SEEGDe.........PQYLD...LPST....AT..SVNIPDLLPGRKYTV
FINC_BOVIN/780-858   SVEGS..........STELN...LPET....AN..SVTLSDLQPGVQYNI
FINC_BOVIN/875-955   VNLPGe........hGQRLP...VSRN....T...FAEVTGLSPGVTYHF
FINC_BOVIN/1142-1225 TNGQQg........ySLEEV...VHAD....QS..SCTFENLSPGLEYNV
FINC_BOVIN/1236-1316 VKNEEd.........VAELS...ISPS....DN..AVVLTNLLPGTEYLV
FINC_BOVIN/1327-1406 ENMGGr.........PREDR...VPPS....RN..SITLTNLNPGTEYVV
FINC_BOVIN/1417-1499 TGGSSp.........VQEFT...VPGS....KS..TATISGLKPGVDYTI
FINC_BOVIN/1511-1590 KNGPGp.........SKTKT...VGPD....QT..EMTIEGLQPTVEYVV
FINC_BOVIN/1601-1680 KEKTGp.........MKEIN...LAPD....SS..SVVVSGLMVATKYEV
FINC_BOVIN/1693-1771 ANGQT..........PIQRT...IRPD....VR..SYTITGLQPGTDYKI
FINC_BOVIN/1782-1861 PGSPPr........eVVPRP...RPGV....T...EATITGLEPGTEYTI
FINC_CHICK/551-630   PEDG............IHEL...LPAPgg.eED..TAELHGLRPGSEYTI
FINC_RAT/1266-1346   AGEGIp.........IFEDF...VDSS....VG..YYTVTGLEPGIDYDI
GUNB_CELFI/651-733   QGTTQ..........TLVGT...TTAA....A....YILRDLTPGTAYSY
IL7R_HUMAN/129-221   KDENK..........WTHVN...LSST....KL..TLLQRKLQPAAMYEI
ITB4_HUMAN/1127-1208 QGDSEs.........EAHLL...DSKV....P...SVELTNLYPYCDYEM
ITB4_HUMAN/1220-1310 VNDDNrpi.....gpMKKVL...VDNP....KNr.MLLIENLRESQPYRY
ITB4_HUMAN/1581-1665 LNGGE..........LHRLN...IPNP....AQt.SVVVEDLLPNHSYVF
ITB4_HUMAN/1694-1781 AQGGGpa.......tAFRVD...GDSP....ES..RLTVPGLSENVPYKF
KALM_CHICK/178-271   QGIHPsed.....daTNWQT...VAQT....TDe.RVQLSDIRASRWYQF
KALM_CHICK/544-642   VTTESrqnslpnsiiSQSQI...LPAD....HY..VLTVPNLRPSMLYRL
KMLC_CHICK/60-145    SVDNK..........WTDLT...TCRS....T...SFNVQDLQADREYKF
LAR_DROME/322-404    KNANQ..........AFSEI...SGII....TM..YYVVRALSPYTEYEF