hmmindex.man

hmmer源程序

.TH "hmmindex" 1 @RELEASEDATE@ "HMMER @RELEASE@" "HMMER Manual"

.SH NAME
.TP 
hmmindex - create a binary SSI index for an HMM database

.SH SYNOPSIS
.B hmmindex
.I [options]
.I database

.SH DESCRIPTION

.B hmmindex
is a utility that creates a binary SSI ("squid sequence index"
format) index for an HMM database file called
.I database.
The new index file is named
.IR database.ssi.
An SSI index file is required for 
.B hmmfetch
to work, and also for the PVM implementation of 
.B hmmpfam.

.SH OPTIONS

.TP
.B -h
Print brief help; includes version number and summary of
all options, including expert options.


.SH SEE ALSO

.PP
Master man page, with full list of and guide to the individual man
pages: see 
.B hmmer(1).
.PP
A User guide and tutorial came with the distribution:
.B Userguide.ps
[Postscript] and/or
.B Userguide.pdf
[PDF].
.PP
Finally, all documentation is also available online via WWW: 
.B http://hmmer.wustl.edu/

.SH AUTHOR

This software and documentation is: 
.nf
@COPYRIGHT@
HMMER - Biological sequence analysis with profile HMMs
Copyright (C) 1992-1999 Washington University School of Medicine
All Rights Reserved

    This source code is distributed under the terms of the
    GNU General Public License. See the files COPYING and LICENSE
    for details.
.fi
See the file COPYING in your distribution for complete details.

.nf
Sean Eddy
HHMI/Dept. of Genetics
Washington Univ. School of Medicine
4566 Scott Ave.
St Louis, MO 63110 USA
Phone: [phone]
FAX  : [phone]
Email: [e-mail]
.fi