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mcmcdynamicei.r

# sample from the posterior of Quinn's dynamic ecological inference model # in R using linked C++ code in Scythe # # KQ 10/25/2002 "MCMCdynamicEI"

mcmcmnl.r

## MCMCmnl.R samples from the posterior distribution of a multinomial ## logit model using Metropolis-Hastings. ## ## KQ 12/22/2004 ## parse formula and return a list that contains the model response

tomog.r

########## Tomography Plots for Ecological Inference ########## ## produces tomography plots (see King, 1997, A Solution to the ## Ecological Inference Problem, Princeton University Press) ## ## KQ 1

bayesfactors.r

## BayesFactor.R contains functions useful for calculating and comparing ## marginal likelihoods ## ## Originally written by KQ 1/26/2006 ## ## log densities "logdinvgamma"

distn.r

########## Density Functions and Random Number Generators ########## # # note: Matthew Fasman has been working on replacing these with # functions coded in C++. These have been moved to the tmp

mcmclogit.r

## sample from the posterior distribution of a logistic regression ## model in R using linked C++ code in Scythe ## ## KQ 1/23/2003 ## ## Modified to meet new developer specification 7/15/2004 KQ ## M

mcmcirtkd.r

########################################################################## ## sample from a K-dimensional two-parameter item response model with ## probit link. This is just a wrapper function that ca