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📄 pkinase.sto

📁 这是一个基于HMM 模型的生物多序列比对算法的linux实现版本。hmmer
💻 STO
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WEE1_HUMAN/299-569            ........LVHMDIKPSNIFISRTSI...............PNAASEEGD#=GR WEE1_HUMAN/299-569      AS  ............*.....................................TTK_HUMAN/509-775             ........IVHSDLKPANFLIVDG....................MLKLID#=GR TTK_HUMAN/509-775       AS  ............*.....................................STE7_YEAST/191-466            .......KIIHRDIKPSNVLINSK...................GQIKLCD#=GR STE7_YEAST/191-466      AS  ............*.....................................MKK1_YEAST/221-488            ........VIHRDIKPQNILLNEN...................GQVKLCD#=GR MKK1_YEAST/221-488      AS  ............*.....................................BYR1_SCHPO/66-320             .......HIIHRDLKPSNVVVNSR...................GEIKLCD#=GR BYR1_SCHPO/66-320       AS  ............*.....................................ST20_YEAST/620-871            ........VLHRDIKSDNILLSME...................GDIKLTD#=GR ST20_YEAST/620-871      AS  ............*.....................................CC15_YEAST/25-272             ........VIHRDIKAANILLSAD...................NTVKLAD#=GR CC15_YEAST/25-272       AS  ............*.....................................BYR2_SCHPO/394-658            ........IVHRDIKGANILVDNK...................GKIKISD#=GR BYR2_SCHPO/394-658      AS  ............*.....................................NINC_DROME/16-282             ........VLHRDIRGDNILLTKN...................GRVKLCD#=GR NINC_DROME/16-282       AS  ............*.....................................SPK1_YEAST/198-466            ........ISHRDLKPDNILIEQDD.................PVLVKITD#=GR SPK1_YEAST/198-466      AS  ............*.....................................KIN1_SCHPO/125-395            ........VVHRDLKIENILISKT...................GDIKIID#=GR KIN1_SCHPO/125-395      AS  ............*.....................................CDR1_SCHPO/12-258             ........FRHRDLKLENILIKVN..................EQQIKIAD#=GR CDR1_SCHPO/12-258       AS  ............*.....................................K6A1_MOUSE/407-664            ........VVHRDLKPSNILYVDESG...............NPECLRICD#=GR K6A1_MOUSE/407-664      AS  ............*.....................................KPBH_RAT/24-291               ........IVHRDLKPENILLDDN...................MQIRLSD#=GR KPBH_RAT/24-291         AS  ............*.....................................KCC4_MOUSE/42-296             ........IVHRDLKPENLLYATPA................PDAPLKIAD#=GR KCC4_MOUSE/42-296       AS  ............*.....................................CDPK_SOYBN/34-292             ........VMHRDLKPENFLFDTID................EDAKLKATD#=GR CDPK_SOYBN/34-292       AS  ............*.....................................KPK2_PLAFK/111-364            ........VVHRDLKMENLMLENPN................DPSSLKIID#=GR KPK2_PLAFK/111-364      AS  ............*.....................................KMLS_CHICK/1453-1708          ........IVHLDLKPENIMCVNKT.................GTSIKLID#=GR KMLS_CHICK/1453-1708    AS  ............*.....................................MEK1_YEAST/162-444            ........IVHRDLKLDNILLCTPE................PCTRIVLAD#=GR MEK1_YEAST/162-444      AS  ............*.....................................CHK1_SCHPO/10-272             ........VAHRDLKPENILLDYN...................GNLKISD#=GR CHK1_SCHPO/10-272       AS  ............*.....................................CC5_YEAST/82-337              ........VIHRDLKLGNIFFDSN...................YNLKIGD#=GR CC5_YEAST/82-337        AS  ............*.....................................PKD1_DICDI/36-291             ........IIYRDLKPENILIDEK...................GHIKLTD#=GR PKD1_DICDI/36-291       AS  ............*.....................................KI82_YEAST/324-602            ........FIYRDLKPENILLHQS...................GHVMLSD#=GR KI82_YEAST/324-602      AS  ............*.....................................KAKT_MLVAT/171-429            .......NVVYRDLKLENLMLDKD...................GHIKITD#=GR KAKT_MLVAT/171-429      AS  ............*.....................................KGP1_DROME/457-717            ........IIYRDLKPENLMLDER...................GYVKIVD#=GR KGP1_DROME/457-717      AS  ............*.....................................ARK1_BOVIN/191-453            ........VVYRDLKPANILLDEH...................GHVRISD#=GR ARK1_BOVIN/191-453      AS  ............*.....................................FUSE_DROME/4-254              ........ILHRDLKPQNVLLDKN...................MHAKLCD#=GR FUSE_DROME/4-254        AS  ..................................................PIM1_HUMAN/38-290             ........VLHRDIKDENILIDLN..................RGELKLID#=GR PIM1_HUMAN/38-290       AS  ............*.....................................KAB7_YEAST/1096-1354          ........IVHRDIKDENVIVDSK...................GFVKIID#=GR KAB7_YEAST/1096-1354    AS  ............*.....................................SGV1_YEAST/60-366             ........FMHRDIKTANILIDHN...................GVLKLAD#=GR SGV1_YEAST/60-366       AS  ............*.....................................CC21_MEDSA/1-284              ........VLHRDLKPQNLLIDRR..................TNSLKLAD#=GR CC21_MEDSA/1-284        AS  ............*.....................................KI28_YEAST/7-290              ........ILHRDLKPNNLLFSPD...................GQIKVAD#=GR KI28_YEAST/7-290        AS  ............*.....................................MAK_RAT/4-284                 ........FFHRDMKPENLLCMGP...................ELVKIAD#=GR MAK_RAT/4-284           AS  ............*.....................................KKIA_HUMAN/5-288              ........CIHRDVKPENILITKH...................SVIKLCD#=GR KKIA_HUMAN/5-288        AS  ............*.....................................CTK1_YEAST/183-469            ........ILHRDVKGSNILIDNQ...................GNLKITD#=GR CTK1_YEAST/183-469      AS  ............*.....................................KG3A_RAT/119-403              ........VCHRDIKPQNLLVDPD..................TAVLKLCD#=GR KG3A_RAT/119-403        AS  ............*.....................................MK04_HUMAN/20-312             ........VLHRDLKPANIFISTE..................DLVLKIGD#=GR MK04_HUMAN/20-312       AS  ............*.....................................ERK1_CANAL/68-371             ........VLHRDLKPSNLLLNSN...................CDLKICD#=GR ERK1_CANAL/68-371       AS  ............*.....................................KC21_CHICK/39-324             ........IMHRDVKPHNVMIDHE..................HRKLRLID#=GR KC21_CHICK/39-324       AS  ............*.....................................CLK1_MOUSE/160-476            ........LTHTDLKPENILFVKSDYTEAYNPKMKRDERTIVNPDIKVVD#=GR CLK1_MOUSE/160-476      AS  ............*.....................................NPR1_YEAST/438-742            ........LAHRDLKLDNCVINEK...................GIVKLID#=GR NPR1_YEAST/438-742      AS  ............*.....................................SAT4_YEAST/316-590            ........VCHRDLKPENLLLTHD...................GVLKITD#=GR SAT4_YEAST/316-590      AS  ............*.....................................KKL6_YEAST/192-508            ........IIHRDLKLENILLKYSFDDINSFR...DSPIYCKQNFIELAD#=GR KKL6_YEAST/192-508      AS  ............*.....................................RAN1_SCHPO/18-295             ........IYHRDLKPENIMVGND..................VNTVYLAD#=GR RAN1_SCHPO/18-295       AS  ............*.....................................TRKA_HUMAN/510-781            ........FVHRDLATRNCLVGQG...................LVVKIGD#=GR TRKA_HUMAN/510-781      AS  ............*.....................................KSYK_PIG/364-619              ........FVHRDLAARNVLLVTQ...................HYAKISD#=GR KSYK_PIG/364-619        AS  ............*.....................................BFR2_HUMAN/367-643            ........CIHRDLAARNVLVTEN...................NVMKIAD#=GR BFR2_HUMAN/367-643      AS  ............*.....................................ABL1_CAEEL/311-562            ........FIHRDLAARNCLVSEH...................NIVKIAD#=GR ABL1_CAEEL/311-562      AS  ............*.....................................7LES_DROME/2209-2481          ........FVHRDLACRNCLVTESTGS............TDRRRTVKIGDJAK1_HUMAN/864-1137           ........YVHRDLAARNVLVESE...................HQVKIGD#=GR JAK1_HUMAN/864-1137     AS  ............*.....................................EGFR_DROME/938-1194           ........LVHRDLAARNVLVQTP...................SLVKITD#=GR EGFR_DROME/938-1194     AS  ............*.....................................RYK_HUMAN/327-593             ........VIHKDLAARNCVIDDT...................LQVKITD#=GR RYK_HUMAN/327-593       AS  ............*.....................................MET_HUMAN/1078-1337           ........FVHRDLAARNCMLDEK...................FTVKVAD#=GR MET_HUMAN/1078-1337     AS  ............*.....................................PHY1_CERPU/1004-1282          ........IIHRDLKSMNILVKSVKVTK..........SEIGYVHVKVAD#=GR PHY1_CERPU/1004-1282    AS  ............*.....................................M3K9_HUMAN/3-262              ......VPIIHRDLKSSNILILQKVENG...........DLSNKILKITD#=GR M3K9_HUMAN/3-262        AS  ............*.....................................KYK2_DICDI/108-364            ........IVHRDLTSQNILLDEL...................GNIKISD#=GR KYK2_DICDI/108-364      AS  ............*.....................................KYK1_DICDI/1289-1559          .......PILHRDLSSRNILLDHNIDPKNP......VVSSRQDIKCKISD#=GR KYK1_DICDI/1289-1559    AS  ............*.....................................KMIL_AVIMH/82-339             ........IIHRDMKSNNIFLHGG...................LTVKIGD#=GR KMIL_AVIMH/82-339       AS  ............*.....................................KPRO_MAIZE/534-812            ......EWVIHCDVKPENILLDQA...................FEPKITD#=GR KPRO_MAIZE/534-812      AS  ............*.....................................AVR1_HUMAN/208-495            TQ..GKPAIAHRDLKSKNILVKKN...................GQCCIAD#=GR AVR1_HUMAN/208-495      AS  ............*.....................................AVR2_HUMAN/192-479            LKDGHKPAISHRDIKSKNVLLKNN...................LTACIAD#=GR AVR2_HUMAN/192-479      AS  ............*.....................................PKN1_MYXXA/59-320             ........IVHRDLKPDNIFLVRRNG...............NAPFVKVLD#=GR PKN1_MYXXA/59-320       AS  ............*.....................................KMOS_CERAE/60-338             ........IVHLDLKPANILISEQ...................DVCKISD#=GR KMOS_CERAE/60-338       AS  ............*.....................................KR1_PRVKA/53-332              ........IMHRDVKAENIFLEDV...................DTVCLGD#=GR KR1_PRVKA/53-332        AS  ............*.....................................KR1_HSV11/191-478             ........IIHRDIKTENIFINTP...................EDICLGD#=GR KR1_HSV11/191-478       AS  ............*.....................................JAK1_HUMAN/571-833            ........LVHGNVCTKNLLLARE..................GIDSECGPHR25_YEAST/9-273              ........FIHRDIKPDNFLMGVGR................RGSTVHVID#=GR HR25_YEAST/9-273        AS  ............*.....................................#=GC seq_cons                     ........llHRDLKscNlLlsps...................splKlsDWEE1_HUMAN/299-569            EDDWASNK....................VMFKIGDLGHVTRISSPQV...#=GR WEE1_HUMAN/299-569      AS  ..................................................TTK_HUMAN/509-775             FGIANQMQPD................TTSVVKDSQVGTVNYM.PPEAIKD#=GR TTK_HUMAN/509-775       AS  ..................................................STE7_YEAST/191-466            FGVSKKLI....................NSIADTFVGTSTYM.SPER...#=GR STE7_YEAST/191-466      AS  ..................................................MKK1_YEAST/221-488            FGVSGEAV....................NSLATTFTGTSFYM.APER...#=GR MKK1_YEAST/221-488      AS  ..................................................BYR1_SCHPO/66-320             FGVSGELV....................NSVAQTFVGTSTYM.SPER...#=GR BYR1_SCHPO/66-320       AS  ..................................................ST20_YEAST/620-871            FGFCAQINE..................LNLKRTTMVGTPYWM.APEV...#=GR ST20_YEAST/620-871      AS  ..................................................CC15_YEAST/25-272             FGVSTIV.....................NSSALTLAGTLNWM.APEI...#=GR CC15_YEAST/25-272       AS  ..................................................BYR2_SCHPO/394-658            FGISKKLELNST............STKTGGARPSFQGSSFWM.APEV...#=GR BYR2_SCHPO/394-658      AS  ..................................................NINC_DROME/16-282             FGLSRQVDS..................TLGKRGTCIGSPCWM.APEVVS.#=GR NINC_DROME/16-282       AS  ..................................................SPK1_YEAST/198-466            FGLAKVQG...................NGSFMKTFCGTLAYV.APEVIRG#=GR SPK1_YEAST/198-466      AS  ..................................................KIN1_SCHPO/125-395            FGLSNLYR...................RQSRLRTFCGSLYFA.APEL...#=GR KIN1_SCHPO/125-395      AS  ..................................................CDR1_SCHPO/12-258             FGMATVEP...................NDSCLENYCGSLHYL.APEI...#=GR CDR1_SCHPO/12-258       AS  ..................................................K6A1_MOUSE/407-664            FGFAKQLRA..................ENGLLMTPCYTANFV.APEV...#=GR K6A1_MOUSE/407-664      AS  ..................................................KPBH_RAT/24-291               FGFSCHLE...................PGEKLRELCGTPGYL.APEI...#=GR KPBH_RAT/24-291         AS  ..................................................KCC4_MOUSE/42-296             FGLSKIVE...................HQVLMKTVCGTPGYC.APEI...#=GR KCC4_MOUSE/42-296       AS  ..................................................CDPK_SOYBN/34-292             FGLSVFYK...................PGESFCDVVGSPYYV.APEV...#=GR CDPK_SOYBN/34-292       AS  ..................................................KPK2_PLAFK/111-364            FGLASFLN....................SPSMNMRCGSPGYV.APEI...#=GR KPK2_PLAFK/111-364      AS  ..................................................KMLS_CHICK/1453-1708          FGLARRLE...................SAGSLKVLFGTPEFV.APEV...#=GR KMLS_CHICK/1453-1708    AS  ..................................................MEK1_YEAST/162-444            FGIAKDLNS..................NKERMHTVVGTPEYC.APEVGFR#=GR MEK1_YEAST/162-444      AS  ..................................................CHK1_SCHPO/10-272             FGFASLFSYK................GKSRLLNSPVGSPPYA.APEI...#=GR CHK1_SCHPO/10-272       AS  ..................................................CC5_YEAST/82-337              FGLAAVLAN..................ESERKYTICGTPNYI.APEV...#=GR CC5_YEAST/82-337        AS  ..................................................PKD1_DICDI/36-291             FGFSKKTV...................GGKNTSSVCGTFDYM.APEI...#=GR PKD1_DICDI/36-291       AS  ..................................................KI82_YEAST/324-602            FDLSIQATGSKKPTMKDSTYLDTKICSDGFRTNSFVGTEEYL.APEV...#=GR KI82_YEAST/324-602      AS  ..................................................KAKT_MLVAT/171-429            FGLCKEGIK..................DGATMKTFCGTPEYL.APEV...#=GR KAKT_MLVAT/171-429      

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