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📄 pkinase.sto

📁 这是一个基于HMM 模型的生物多序列比对算法的linux实现版本。hmmer
💻 STO
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SAT4_YEAST/316-590            TTLDLFQD..................AKGEYCEVMEYCAGG......DLF#=GR SAT4_YEAST/316-590      AS  ..................................................KKL6_YEAST/192-508            KLLGINNPIFVTSKKPLCDLIIKTPRALPPCDMIMSYCPAG......DLL#=GR KKL6_YEAST/192-508      AS  ..................................................RAN1_SCHPO/18-295             TLHRVLE...................TEDAIYVVLQYCPNG......DLF#=GR RAN1_SCHPO/18-295       AS  ..................................................TRKA_HUMAN/510-781            RFFGVCTE...................GRPLLMVFEYMRHG......DLN#=GR TRKA_HUMAN/510-781      AS  ..................................................KSYK_PIG/364-619              RMIGICE....................AESWMLVMEMAELG......PLN#=GR KSYK_PIG/364-619        AS  ..................................................BFR2_HUMAN/367-643            NLLGACTQ...................DGPLYVIVEYASKG......NLR#=GR BFR2_HUMAN/367-643      AS  ..................................................ABL1_CAEEL/311-562            RLLGVCT...................HEAPFYIITEFMCNG......NLL#=GR ABL1_CAEEL/311-562      AS  ..................................................7LES_DROME/2209-2481          CLVGICF...................DTESISLIMEHMEAG......DLLJAK1_HUMAN/864-1137           KYKGICTE.................DGGNGIKLIMEFLPSG......SLK#=GR JAK1_HUMAN/864-1137     AS  ..................................................EGFR_DROME/938-1194           KLLAVCM....................SSQMMLITQLMPLG......CLL#=GR EGFR_DROME/938-1194     AS  ..................................................RYK_HUMAN/327-593             PITHVCIE..................EGEKPMVILPYMNWG......NLK#=GR RYK_HUMAN/327-593       AS  ..................................................MET_HUMAN/1078-1337           SLLGICLR..................SEGSPLVVLPYMKHG......DLR#=GR MET_HUMAN/1078-1337     AS  ..................................................PHY1_CERPU/1004-1282          SMFCSPL...................YRRKCSIIMELMDG.......DLL#=GR PHY1_CERPU/1004-1282    AS  ..................................................M3K9_HUMAN/3-262              ALRGVCL...................KEPNLCLVMEFARGG......PLN#=GR M3K9_HUMAN/3-262        AS  ..................................................KYK2_DICDI/108-364            MFIGACY.....................KPACIITEYMAGG......SLY#=GR KYK2_DICDI/108-364      AS  ..................................................KYK1_DICDI/1289-1559          QFLGACTA.................GGEDHHCIVTEWMGGG......SLR#=GR KYK1_DICDI/1289-1559    AS  ..................................................KMIL_AVIMH/82-339             LFMGYMT....................KDNLAIVTQWCEGS......SLY#=GR KMIL_AVIMH/82-339       AS  ..................................................KPRO_MAIZE/534-812            RIWGFCS...................EGSHRLLVSEYVENG......SLA#=GR KPRO_MAIZE/534-812      AS  ..................................................AVR1_HUMAN/208-495            GFIASDMTS...............RHSSTQLWLITHYHEMG......SLY#=GR AVR1_HUMAN/208-495      AS  ..................................................AVR2_HUMAN/192-479            QFIGAEKRG...............TSVDVDLWLITAFHEKG......SLS#=GR AVR2_HUMAN/192-479      AS  ..................................................PKN1_MYXXA/59-320             SIFDMDA...................TPPRPYLIMEFLDG.......APL#=GR PKN1_MYXXA/59-320       AS  ..................................................KMOS_CERAE/60-338             RVVAASTRTP..............AGSNSLGTIIMEFGGNV......TLH#=GR KMOS_CERAE/60-338       AS  ..................................................KR1_PRVKA/53-332              RMKQMLA...................RGPATCLVLPHFRC.......DLY#=GR KR1_PRVKA/53-332        AS  ..................................................KR1_HSV11/191-478             PLLDLHV...................VSGVTCLVLPKYQA.......DLY#=GR KR1_HSV11/191-478       AS  ..................................................JAK1_HUMAN/571-833            YLYGVCV...................RDVENIMVEEFVEGG......PLDHR25_YEAST/9-273              PFIRWFGR..................EGEYNAMVIDLLGP.......SLE#=GR HR25_YEAST/9-273        AS  ..................................................#=GC seq_cons                     phhshhp...................ppsphhllhEahssG......sLhWEE1_HUMAN/299-569            DAISENYRI............MSYFKEAELKDLLLQVGRGLRYIHSMS..#=GR WEE1_HUMAN/299-569      AS  ..................................................TTK_HUMAN/509-775             SWLKKKK................SIDPWERKSYWKNMLEAVHTIHQHG..#=GR TTK_HUMAN/509-775       AS  ..................................................STE7_YEAST/191-466            KRFVQRGTVS.........SKKTWFNELTISKIAYGVLNGLDHLYRQY..#=GR STE7_YEAST/191-466      AS  ..................................................MKK1_YEAST/221-488            KNLLERG...............GRISEKVLGKIAEAVLRGLSYLHEKK..#=GR MKK1_YEAST/221-488      AS  ..................................................BYR1_SCHPO/66-320             AILREGG................PIPLDILGKIINSMVKGLIYLYNVL..#=GR BYR1_SCHPO/66-320       AS  ..................................................ST20_YEAST/620-871            DVVTHCI................LT.EGQIGAVCRETLSGLEFLHSKG..#=GR ST20_YEAST/620-871      AS  ..................................................CC15_YEAST/25-272             RLISRSS...............TGLSENESKTYVTQTLLGLKYLHGEG..#=GR CC15_YEAST/25-272       AS  ..................................................BYR2_SCHPO/394-658            GLLTMYG................SFEETLVKNFIKQTLKGLEYLHSRG..#=GR BYR2_SCHPO/394-658      AS  ..................................................NINC_DROME/16-282             NKLLKLD...............RRMREEHIAYIIRETCRAAIELNRNH..#=GR NINC_DROME/16-282       AS  ..................................................SPK1_YEAST/198-466            DFVAAHG................AVGEDAGREISRQILTAIKYIHSMG..#=GR SPK1_YEAST/198-466      AS  ..................................................KIN1_SCHPO/125-395            DYIISHG................KLKEKQARKFVRQIGSALSYLHQNS..#=GR KIN1_SCHPO/125-395      AS  ..................................................CDR1_SCHPO/12-258             HYIRKHG................PLSEREAAHYLSQILDAVAHCHRFR..#=GR CDR1_SCHPO/12-258       AS  ..................................................K6A1_MOUSE/407-664            DKILRQK................FFSEREASFVLHTISKTVEYLHSQG..#=GR K6A1_MOUSE/407-664      AS  ..................................................KPBH_RAT/24-291               DYLTEKV................ALSEKETRSIMRSLLEAVNFLHVNN..#=GR KPBH_RAT/24-291         AS  ..................................................KCC4_MOUSE/42-296             DRIVEKG................YYSERDARDAVKQILEAVAYLHENG..#=GR KCC4_MOUSE/42-296       AS  ..................................................CDPK_SOYBN/34-292             DRIVQKG................HYSERQAARLIKTIVEVVEACHSLG..#=GR CDPK_SOYBN/34-292       AS  ..................................................KPK2_PLAFK/111-364            EYLNNNG................PYTEQVAKKAMKRVLIALEALHSNG..#=GR KPK2_PLAFK/111-364      AS  ..................................................KMLS_CHICK/1453-1708          ERIIDED...............FELTERECIKYMRQISEGVEYIHKQG..#=GR KMLS_CHICK/1453-1708    AS  ..................................................MEK1_YEAST/162-444            SYLAKGDC.............LTSMSETESLLIVFQILQALNYLHDQD..#=GR MEK1_YEAST/162-444      AS  ..................................................CHK1_SCHPO/10-272             DKIEPDV...............GID.EDVAQFYFAQLMEGISFMHSKG..#=GR CHK1_SCHPO/10-272       AS  ..................................................CC5_YEAST/82-337              ELLKRRK................VLTEPEVRFFTTQICGAIKYMHSRR..#=GR CC5_YEAST/82-337        AS  ..................................................PKD1_DICDI/36-291             HHLRANK................CFTEQTTKLIVAEIVLAIEYLHAEN..#=GR PKD1_DICDI/36-291       AS  ..................................................KI82_YEAST/324-602            RALQTRKS..............KCIAEEDAKFYASEVVAALEYLHLLG..#=GR KI82_YEAST/324-602      AS  ..................................................KAKT_MLVAT/171-429            FHLSRER................VFSEDRARFYGAEIVSALDYLHSEK..#=GR KAKT_MLVAT/171-429      AS  ..................................................KGP1_DROME/457-717            TMLRDRG................SFEDNAAQFIIGCVLQAFEYLHARG..#=GR KGP1_DROME/457-717      AS  ..................................................ARK1_BOVIN/191-453            YHLSQHG................VFSEADMRFYAAEIILGLEHMHNRF..#=GR ARK1_BOVIN/191-453      AS  ..................................................FUSE_DROME/4-254              RYLSYNG................AMGEEPARRVTGHLVSALYYLHSNR..#=GR FUSE_DROME/4-254        AS  ..................................................PIM1_HUMAN/38-290             DFITERG................ALQEELARSFFWQVLEAVRHCHNCG..#=GR PIM1_HUMAN/38-290       AS  ..................................................KAB7_YEAST/1096-1354          DLIEFKT................NMTEFEAKLIFKQVVAGIKHLHDQG..#=GR KAB7_YEAST/1096-1354    AS  ..................................................SGV1_YEAST/60-366             GVLHNPR...............INLEMCDIKNMMLQILEGLNYIHCAK..#=GR SGV1_YEAST/60-366       AS  ..................................................CC21_MEDSA/1-284              KHMDSSPE..............FIKDPRQVKMFLYQMLCGIAYCHSHR..#=GR CC21_MEDSA/1-284        AS  ..................................................KI28_YEAST/7-290              VVIKDKS...............ILFTPADIKAWMLMTLRGVYHCHRNF..#=GR KI28_YEAST/7-290        AS  ..................................................MAK_RAT/4-284                 LMKDRNK................LFPESVIRNIMYQILQGLAFIHKHG..#=GR MAK_RAT/4-284           AS  ..................................................KKIA_HUMAN/5-288              ELDRYQR................GVPEHLVKSITWQTLQAVNFCHKHN..#=GR KKIA_HUMAN/5-288        AS  ..................................................CTK1_YEAST/183-469            GLLLNKE...............VQISHSQCKHLFKQLLLGMEYLHDNK..#=GR CTK1_YEAST/183-469      AS  ..................................................KG3A_RAT/119-403              RHFTKAK...............LIIPIIYVKVYMYQLFRSLAYIHSQG..#=GR KG3A_RAT/119-403        AS  ..................................................MK04_HUMAN/20-312             RLLEQGT.................LAEEHAKLFMYQLLRGLKYIHSAN..#=GR MK04_HUMAN/20-312       AS  ..................................................ERK1_CANAL/68-371             RVIRTQN.................LSDDHIQYFIYQTLRALKAMHSAN..#=GR ERK1_CANAL/68-371       AS  ..................................................KC21_CHICK/39-324             QLYQTLT...................DYDIRFYMYEILKALDYCHSMG..#=GR KC21_CHICK/39-324       AS  ..................................................CLK1_MOUSE/160-476            DFIKENSF..............LPFRMDHIRKMAYQICKSVNFLHSNK..#=GR CLK1_MOUSE/160-476      AS  ..................................................NPR1_YEAST/438-742            AIVMSNK.................MSYEEICCCFKQILTGVQYLHSIG..#=GR NPR1_YEAST/438-742      AS  ..................................................SAT4_YEAST/316-590            TLVVAAG................KLEYMEADCFFKQLIRGVVYMHEMG..#=GR SAT4_YEAST/316-590      AS  ..................................................KKL6_YEAST/192-508            AAVMARN...............GRLEAWLIQRIFTEVVLAVKYLHENS..#=GR KKL6_YEAST/192-508      AS  ..................................................RAN1_SCHPO/18-295             TYITEKKV..............YQGNSHLIKTVFLQLISAVEHCHSVG..#=GR RAN1_SCHPO/18-295       AS  ..................................................TRKA_HUMAN/510-781            RFLRSHGPDAKLLA.GGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH..#=GR TRKA_HUMAN/510-781      AS  ..................................................KSYK_PIG/364-619              KYLQQNR................HVKDKNIIELVHQVSMGMKYLEECN..#=GR KSYK_PIG/364-619        AS  ..................................................BFR2_HUMAN/367-643            EYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK..#=GR BFR2_HUMAN/367-643      AS  ..................................................ABL1_CAEEL/311-562            EYLRRTDK..............SLLPPIILVQMASQIASGMSYLEARH..#=GR ABL1_CAEEL/311-562      AS  ..................................................7LES_DROME/2209-2481          SYLRAARATSTQ.....EPQPTAGLSLSELLAMCIDVANGCSYLEDMH..JAK1_HUMAN/864-1137           EYLPKNK...............NKINLKQQLKYAVQICKGMDYLGSRQ..#=GR JAK1_HUMAN/864-1137     AS  ..................................................EGFR_DROME/938-1194           DYVRNNR...............DKIGSKALLNWSTQIAKGMSYLEEKR..#=GR EGFR_DROME/938-1194     AS  ..................................................RYK_HUMAN/327-593             LFLRQCKLVEA........NNPQAISQQDLVHMAIQIACGMSYLARRE..#=GR RYK_HUMAN/327-593       AS  ..................................................MET_HUMAN/1078-1337           NFIRNET...............HNPTVKDLIGFGLQVAKGMKYLASKK..#=GR MET_HUMAN/1078-1337     AS  ..................................................PHY1_CERPU/1004-1282          ALMQRRLDRNE.......DHDSPPFSILEVVDIILQTSEGMNYLHEKG..#=GR PHY1_CERPU/1004-1282    AS  ..................................................M3K9_HUMAN/3-262              RVLSGKR.................IPPDILVNWAVQIARGMNYLHDEAI.#=GR M3K9_HUMAN/3-262        AS  ..................................................KYK2_DICDI/108-364            NILHNPNSST..........PKVKYSFPLVLKMATDMALGLLHLHSIT..#=GR KYK2_DICDI/108-364      AS  ..................................................KYK1_DICDI/1289-1559          QFLTDHFN.............LLEQNPHIRLKLALDIAKGMNYLHGWTP.#=GR KYK1_DICDI/1289-1559    AS  ..................................................KMIL_AVIMH/82-339             KHLHVQE...............TKFQMFQLIDIARQTAQGMDYLHAKN..#=GR KMIL_AVIMH/82-339       AS  ..................................................KPRO_MAIZE/534-812            NILFSEGG.............NILLDWEGRFNIALGVAKGLAYLHHECL.#=GR KPRO_MAIZE/534-812      AS  ..................................................AVR1_HUMAN/208-495            DYLQLTT.................LDTVSCLRIVLSIASGLAHLHIEIFG#=GR AVR1_HUMAN/208-495      AS  ..................................................AVR2_HUMAN/192-479            DFLKANV.................VSWNELCHIAETMARGLAYLHEDIPG#=GR AVR2_HUMAN/192-479      AS  ..................................................PKN1_MYXXA/59-320             SAWVGTP.................LAAGAVVSVLSQVCDALQAAHARG..#=GR PKN1_MYXXA/59-320       AS  ..................................................KMOS_CERAE/60-338             QVIYGAASHPEGDAGEPHCSTGGPLTLGKCLKYSLDVVNGLLFLHSQS..#=GR KMOS_CERAE/60-338       AS  ..................................................KR1_PRVKA/53-332              SYLTMRD...............GPLDMRDAGCVIRAVLRGLAYLHGMR..#=GR KR1_PRVKA/53-332        AS  ..................................................KR1_HSV11/191-478             TYLSRRL...............NPLGRPQIAAVSRQLLSAVDYIHRQG..#=GR KR1_HSV11/191-478       AS  ..................................................JAK1_HUMAN/571-833            LFMHRKS...............DVLTTPWKFKVAKQLASALSYLEDKD..HR25_YEAST/9-273              DLFNYCH...............RRFSFKTVIMLALQMFCRIQYIHGRS..#=GR HR25_YEAST/9-273        AS  ..................................................#=GC seq_cons                     phlpppt.................hstpphtphhhplhpulpYLHsps..

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