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📄 pkinase.sto

📁 这是一个基于HMM 模型的生物多序列比对算法的linux实现版本。hmmer
💻 STO
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#=GR CDPK_SOYBN/34-292       AS  ..................................................KPK2_PLAFK/111-364            KSKVKES.....................NVYTEIEVLRKVM....HKYII#=GR KPK2_PLAFK/111-364      AS  ..................................................KMLS_CHICK/1453-1708          AYSAKEK....................ENIRDEISIMNCLH....HPKLV#=GR KMLS_CHICK/1453-1708    AS  ..................................................MEK1_YEAST/162-444            LKPNK........................FDKEARILLRLD....HPNII#=GR MEK1_YEAST/162-444      AS  ..................................................CHK1_SCHPO/10-272             KHATSCMNAG..............VWARRMASEIQLHKLCN...GHKNII#=GR CHK1_SCHPO/10-272       AS  ..................................................CC5_YEAST/82-337              KASIKSEKT.................RKKLLSEIQIHKSMS....HPNIV#=GR CC5_YEAST/82-337        AS  ..................................................PKD1_DICDI/36-291             RETIVHEKH.................KEHVNNEINIMLNIS....HPYIV#=GR PKD1_DICDI/36-291       AS  ..................................................KI82_YEAST/324-602            KHEMIKRKK.................IKRVLTEQEILATSD....HPFIV#=GR KI82_YEAST/324-602      AS  ..................................................KAKT_MLVAT/171-429            KEVIVAKDE.................VAHTLTENRVLQNSR....HPFLT#=GR KAKT_MLVAT/171-429      AS  ..................................................KGP1_DROME/457-717            KRHIVDTKQ.................EEHIFSERHIMLSSR....SPFIC#=GR KGP1_DROME/457-717      AS  ..................................................ARK1_BOVIN/191-453            KKRIKMKQG.................ETLALNERIMLSLVST.GDCPFIV#=GR ARK1_BOVIN/191-453      AS  ..................................................FUSE_DROME/4-254              GRATKEL....................KNLRRECDIQARLK....HPHVI#=GR FUSE_DROME/4-254        AS  ..................................................PIM1_HUMAN/38-290             KDRISDWGEL..............PNGTRVPMEVVLLKKVSS..GFSGVI#=GR PIM1_HUMAN/38-290       AS  ..................................................KAB7_YEAST/1096-1354          RILVDTWVRD..............RKLGTIPSEIQIMATLNK.KPHENIL#=GR KAB7_YEAST/1096-1354    AS  ..................................................SGV1_YEAST/60-366             EKDLFPI.....................TAQREITILKRLN....HKNII#=GR SGV1_YEAST/60-366       AS  ..................................................CC21_MEDSA/1-284              EQEDEGVP...................STAIREISLLKEMQ....HRNIV#=GR CC21_MEDSA/1-284        AS  ..................................................KI28_YEAST/7-290              TSEFKDGL..................DMSAIREVKYLQEMQ....HPNVI#=GR KI28_YEAST/7-290        AS  ..................................................MAK_RAT/4-284                 RKFYSWDE...................CMNLREVKSLKKLN....HANVI#=GR MAK_RAT/4-284           AS  ..................................................KKIA_HUMAN/5-288              SEDDPVIK...................KIALREIRMLKQLK....HPNLV#=GR KKIA_HUMAN/5-288        AS  ..................................................CTK1_YEAST/183-469            GEREGFP....................ITSIREIKLLQSFD....HPNVS#=GR CTK1_YEAST/183-469      AS  ..................................................KG3A_RAT/119-403              DKRFK.........................NRELQIMRKLD....HCNIV#=GR KG3A_RAT/119-403        AS  ..................................................MK04_HUMAN/20-312             ARSMKH.......................ALREIKIIRRLD....HDNIV#=GR MK04_HUMAN/20-312       AS  ..................................................ERK1_CANAL/68-371             ERSMLCL.....................RTLRELKLLKHFN....HENII#=GR ERK1_CANAL/68-371       AS  ..................................................KC21_CHICK/39-324             PVKKKK.......................IKREIKILENLR...GGPNII#=GR KC21_CHICK/39-324       AS  ..................................................CLK1_MOUSE/160-476            DRYCEA.......................AQSEIQVLEHLNTTDPHSTFR#=GR CLK1_MOUSE/160-476      AS  ..................................................NPR1_YEAST/438-742            KFENESKRD................YVKKITSEYCIGTTLN....HPNII#=GR NPR1_YEAST/438-742      AS  ..................................................SAT4_YEAST/316-590            RTSESAEKY.................SKRLTSEFCISSSLH....HTNIV#=GR SAT4_YEAST/316-590      AS  ..................................................KKL6_YEAST/192-508            QINTSLRYKETL...........SRLENSLTRELQVLKSLN....HPCIV#=GR KKL6_YEAST/192-508      AS  ..................................................RAN1_SCHPO/18-295             EKQKKL.......................QARELALHARVS...SHPYII#=GR RAN1_SCHPO/18-295       AS  ..................................................TRKA_HUMAN/510-781            EASESAR....................QDFQREAELLTMLQ....HQHIV#=GR TRKA_HUMAN/510-781      AS  ..................................................KSYK_PIG/364-619              EANDPALK...................DELLAEANVMQQLD....NPYIV#=GR KSYK_PIG/364-619        AS  ..................................................BFR2_HUMAN/367-643            EKDLSD.......................LVSEMEMMKMIG...KHKNII#=GR BFR2_HUMAN/367-643      AS  ..................................................ABL1_CAEEL/311-562            EDAMPLH.....................EFLAEAAIMKDLH....HKNLV#=GR ABL1_CAEEL/311-562      AS  ..................................................7LES_DROME/2209-2481          ASEFAE.......................LLQEAQLMSNFK....HENIVJAK1_HUMAN/864-1137           PESGGNHI...................ADLKKEIEILRNLY....HENIV#=GR JAK1_HUMAN/864-1137     AS  ..................................................EGFR_DROME/938-1194           AESSEE.......................FLREAYIMASEE....HVNLL#=GR EGFR_DROME/938-1194     AS  ..................................................RYK_HUMAN/327-593             ASEIQVT.....................MMLTESCKLRGLH....HRNLL#=GR RYK_HUMAN/327-593       AS  ..................................................MET_HUMAN/1078-1337           RITDIGEV...................SQFLTEGIIMKDFS....HPNVL#=GR MET_HUMAN/1078-1337     AS  ..................................................PHY1_CERPU/1004-1282          RNNED........................FKREVEILAELC....HPNIT#=GR PHY1_CERPU/1004-1282    AS  ..................................................M3K9_HUMAN/3-262              DEDISQTI...................ENVRQEAKLFAMLK....HPNII#=GR M3K9_HUMAN/3-262        AS  ..................................................KYK2_DICDI/108-364            EEQFKE......................RFIREVQNLKKGN....HQNIV#=GR KYK2_DICDI/108-364      AS  ..................................................KYK1_DICDI/1289-1559          RDQFKTKSS.................LVMFQNEVGILSKLR....HPNVV#=GR KYK1_DICDI/1289-1559    AS  ..................................................KMIL_AVIMH/82-339             PEQFQA.......................FRNEVAVLRKTR....HVNIL#=GR KMIL_AVIMH/82-339       AS  ..................................................KPRO_MAIZE/534-812            VRQGKE......................VFQAELSVIGRIN....HMNLV#=GR KPRO_MAIZE/534-812      AS  ..................................................AVR1_HUMAN/208-495            SRDEKS.......................WFRETELYNTVML..RHENIL#=GR AVR1_HUMAN/208-495      AS  ..................................................AVR2_HUMAN/192-479            IQDKQSW.....................QNEYEVYSLPGMK....HENIL#=GR AVR2_HUMAN/192-479      AS  ..................................................PKN1_MYXXA/59-320             AHLTMYPEL.................VQRFHAEARAVNLIG....HENIV#=GR PKN1_MYXXA/59-320       AS  ..................................................KMOS_CERAE/60-338             KCTKNRLA..................SRRSFWAELNVARLR....HDNIV#=GR KMOS_CERAE/60-338       AS  ..................................................KR1_PRVKA/53-332              GQKPS........................TLMEGMLLQRLS....HDNVM#=GR KR1_PRVKA/53-332        AS  ..................................................KR1_HSV11/191-478             GWYTS........................TSHEARLLRRLD....HPAIL#=GR KR1_HSV11/191-478       AS  ..................................................JAK1_HUMAN/571-833            KVLDPSHRD................ISLAFFEAASMMRQVS....HKHIVHR25_YEAST/9-273              IRSRHP......................QLDYESRVYRYLS....GGVGI#=GR HR25_YEAST/9-273        AS  ..................................................#=GC seq_cons                     cpphpt......................thhpEhplhpplp....HsNIlWEE1_HUMAN/299-569            RYFSAWA...................EDDHMLIQNEYCNGG......SLA#=GR WEE1_HUMAN/299-569      AS  ..................................................TTK_HUMAN/509-775             RLYDYEI...................TDQYIYMVMECGNI.......DLN#=GR TTK_HUMAN/509-775       AS  ..................................................STE7_YEAST/191-466            TFYGAYYNQ................HINNEIIILMEYSDCGSLDKILSVY#=GR STE7_YEAST/191-466      AS  ..................................................MKK1_YEAST/221-488            RYYGMFTD.................DENSSIYIAMEYMGGRS...LDAIY#=GR MKK1_YEAST/221-488      AS  ..................................................BYR1_SCHPO/66-320             GFYGAFQ...................YKNNISLCMEYMDCG......SLD#=GR BYR1_SCHPO/66-320       AS  ..................................................ST20_YEAST/620-871            NFIDSYV...................LKGDLWVIMEYMEGG......SLT#=GR ST20_YEAST/620-871      AS  ..................................................CC15_YEAST/25-272             KYHGFIR...................KSYELYILLEYCANG......SLR#=GR CC15_YEAST/25-272       AS  ..................................................BYR2_SCHPO/394-658            QYLGSNL...................NSDHLNIFLEYVPGG......SVA#=GR BYR2_SCHPO/394-658      AS  ..................................................NINC_DROME/16-282             EFYGVYKLSK..............PNGPDEIWFVMEYCAGGT...AVDMV#=GR NINC_DROME/16-282       AS  ..................................................SPK1_YEAST/198-466            RLKGFYE...................DTESYYMVMEFVSGG......DLM#=GR SPK1_YEAST/198-466      AS  ..................................................KIN1_SCHPO/125-395            EARDVYI...................TNSHYYMVFEFVDGG......QML#=GR KIN1_SCHPO/125-395      AS  ..................................................CDR1_SCHPO/12-258             RLYDVWT...................DHQHMYLALEYVPDG......ELF#=GR CDR1_SCHPO/12-258       AS  ..................................................K6A1_MOUSE/407-664            TLKDVYD...................DGKHVYLVTELMRGG......ELL#=GR K6A1_MOUSE/407-664      AS  ..................................................KPBH_RAT/24-291               TLIDSYE...................SSSFMFLVFDLMRKG......ELF#=GR KPBH_RAT/24-291         AS  ..................................................KCC4_MOUSE/42-296             KLKEIFE...................TPTEISLVLELVTGG......ELF#=GR KCC4_MOUSE/42-296       AS  ..................................................CDPK_SOYBN/34-292             RIEGTYE...................DSTAVHLVMELCEGG......ELF#=GR CDPK_SOYBN/34-292       AS  ..................................................KPK2_PLAFK/111-364            KLISAYE...................QEGFVYLVLEYLKGG......ELF#=GR KPK2_PLAFK/111-364      AS  ..................................................KMLS_CHICK/1453-1708          QCVDAFE...................EKANIVMVLEMVSGG......ELF#=GR KMLS_CHICK/1453-1708    AS  ..................................................MEK1_YEAST/162-444            KVYHTFCD..................RNNHLYIFQDLIPGG......DLF#=GR MEK1_YEAST/162-444      AS  ..................................................CHK1_SCHPO/10-272             HFYNTAE...................NPQWRWVVLEFAQGG......DLF#=GR CHK1_SCHPO/10-272       AS  ..................................................CC5_YEAST/82-337              QFIDCFE...................DDSNVYILLEICPNG......SLM#=GR CC5_YEAST/82-337        AS  ..................................................PKD1_DICDI/36-291             KTYSTFN...................TPTKIHFIMEYAGKK......DLF#=GR PKD1_DICDI/36-291       AS  ..................................................KI82_YEAST/324-602            TLYHSFQ...................TKDYLYLCMEYCMGG......EFF#=GR KI82_YEAST/324-602      AS  ..................................................KAKT_MLVAT/171-429            ALKYSFQ...................THDRLCFVMEYANGG......ELF#=GR KAKT_MLVAT/171-429      AS  ..................................................KGP1_DROME/457-717            RLYRTFR...................DEKYVYMLLEACMGG......EIW#=GR KGP1_DROME/457-717      AS  ..................................................ARK1_BOVIN/191-453            CMSYAFH...................TPDKLSFILDLMNGG......DLH#=GR ARK1_BOVIN/191-453      AS  ..................................................FUSE_DROME/4-254              EMIESFE...................SKTDLFVVTEFALM.......DLH#=GR FUSE_DROME/4-254        AS  ..................................................PIM1_HUMAN/38-290             RLLDWFE...................RPDSFVLILERPEPV.....QDLF#=GR PIM1_HUMAN/38-290       AS  ..................................................KAB7_YEAST/1096-1354          RLLDFFE...................DDDYYYIETPVHGETG...CIDLF#=GR KAB7_YEAST/1096-1354    AS  ..................................................SGV1_YEAST/60-366             KLIEMVYDHSPDIT......NAASSNLHKSFYMILPYMVA.......DLS#=GR SGV1_YEAST/60-366       AS  ..................................................CC21_MEDSA/1-284              RLQDVVH...................SDKRLYLVFEYLDL.......DLK#=GR CC21_MEDSA/1-284        AS  ..................................................KI28_YEAST/7-290              ELIDIFM...................AYDNLNLVLEFLPT.......DLE#=GR KI28_YEAST/7-290        AS  ..................................................MAK_RAT/4-284                 KLKEVIR...................ENDHLYFIFEYMKEN......LYQ#=GR MAK_RAT/4-284           AS  ..................................................KKIA_HUMAN/5-288              NLLEVFR...................RKRRLHLVFEYCDHT......VLH#=GR KKIA_HUMAN/5-288        AS  ..................................................CTK1_YEAST/183-469            TIKEIMVE..................SQKTVYMIFEYADN.......DLS#=GR CTK1_YEAST/183-469      AS  ..................................................KG3A_RAT/119-403              RLRYFFYSSG.............EKKDELYLNLVLEYVPETV....YRVA#=GR KG3A_RAT/119-403        AS  ..................................................MK04_HUMAN/20-312             KVYEVLGPKGTDL........QGELFKFSVAYIVQEYMET.......DLA#=GR MK04_HUMAN/20-312       AS  ..................................................ERK1_CANAL/68-371             SILAIQRPIN..............YESFNEIYLIQELMET.......DLH#=GR ERK1_CANAL/68-371       AS  ..................................................KC21_CHICK/39-324             TLADIVKD.................PVSRTPALVFEHVNNT......DFK#=GR KC21_CHICK/39-324       AS  ..................................................CLK1_MOUSE/160-476            CVQMLEWF.................EHRGHICIVFELLGLS.......TY#=GR CLK1_MOUSE/160-476      AS  ..................................................NPR1_YEAST/438-742            ETIEIVY...................ENDRILQVMEYCEY.......DLF#=GR NPR1_YEAST/438-742      AS  ..................................................

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