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📄 rrm.sto

📁 这是一个基于HMM 模型的生物多序列比对算法的linux实现版本。hmmer
💻 STO
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GR10_BRANA/8-79                 ......RETGRSRGF.....GFVTFKDEKSMKDAIDEMNG.K...ELDGRCABA_MOUSE/77-147               ......PNTGRSRGF.....GFILFKDSSSVEKVLD.QKE.H...RLDGRSFPQ_HUMAN/373-443              .......DRGRSTGK.....GIVEFASKPAARKAFERCSE.G...VFLLTNONA_DROME/378-448              .......DRGKHMGE.....GIVEFAKKSSASACLRMCNE.K...CFFLTNOP3_YEAST/127-190              .............GF.....AFVEFEEAESAAKAIEEVHG.K...SFANQGBP2_YEAST/124-193              .......SKGHHRGM.....GTVEFTKNESVQDAISKFDG.A...LFMDRU2AF_SCHPO/312-383              ......IADGSSKGF.....CFCEFKNPSDAEVAISGLDG.K...DTYGNU2AF_HUMAN/261-332              ......SATGLSKGY.....AFCEYVDINVTDQAIAGLNG.M...QLGDKNUCL_CHICK/283-352              .......RIGSSKRF.....GYVDFLSAEDMDKALQ.LNG.K...KLMGLMODU_DROME/342-410              ..........SKAVL.....AFVTFKQSDAATKALAQLDG.K...TVNKFRU2B_HUMAN/9-81                 ........TMKMRGQ.....AFVIFKELGSSTNALRQLQG.F...PFYGKRU1A_HUMAN/12-84                ........SLKMRGQ.....AFVIFKEVSSATNALRSMQG.F...PFYDKPUB1_YEAST/342-407              ............KGC.....CFIKYDTHEQAAVCIVALAN.F...PFQGRPTB_HUMAN/186-253               .......FTKNNQFQ.....ALLQYADPVSAQHAKLSLDG.Q...NIYNAEWS_HUMAN/363-442               IHIYLDKETGKPKGD.....ATVSYEDPPTAKAAVEWFDG.K...DFQGSARP2_PLAFA/364-438              HQKFKETVLGRNSGF.....GFVSYDNVISAQHAIQFMNG.Y...FVNNKYHH5_YEAST/315-384              ........QANTPHK.....AFVTYKNEEESKKAQKCLNK.T...IFKNHPES4_YEAST/305-374              .......ATKVKYLW.....AFVTYKNSSDSEKAIKRYNN.F...YFRGKYHC4_YEAST/348-415              ..........PTNIF.....AFIKYETEEAAAAALESENH.A...IFLNKPR24_YEAST/212-284              .....QKEHSFNNCC.....AFMVFENKDSAERALQ.MNR.S...LLGNRMODU_DROME/422-484              .............QK.....AVVKFKDDEGFCKSFL.ANE.S...IVNNARNP1_YEAST/37-109               ......PLKKPLKRF.....AFIEFQEGVNLKKVKEKMNG.K...IFMNEGBP2_YEAST/351-421              ......QENGQPTGV.....AVVEYENLVDADFCIQKLNN.Y...NYGGCNOP4_YEAST/292-363              ......KSTGLAKGT.....AFVAFKDQYTYNECIKNAPA.A...GSTSLMEI2_SCHPO/197-265              ..........STDGI.....CIVAFFDIRQAIQAAKSLRSQR...FFNDRIF39_YEAST/79-157               ......EATGKTKGF.....LFVECGSMNDAKKIIKSFHGKR...LDLKHROF_HUMAN/113-183               .......PEGKITGE.....AFVQFASQELAEKALG.KHK.E...RIGHRMODU_DROME/260-326              ..........RLMPR.....AFVRLASVDDIPKALK.LHS.T...ELFSRWHI3_YEAST/540-614              ...NTTSNGHSHGPM.....CFVEFDDVSFATRALAELYG.R...QLPRSCPO_DROME/453-526               ....TSKNGKTASPV.....GFVTFHTRAGAEAAKQDLQGVR...FDPDMRU2B_HUMAN/153-220              ...........RHDI.....AFVEFENDGQAGAARDALQGFK...ITPSHRU1A_HUMAN/210-276              ...........RHDI.....AFVEFDNEVQAGAARDALQG.F...KITQNRU1A_YEAST/229-293              ............RNL.....AFVEYETVADATKIKNQLGS.T...YKLQNSFR1_HUMAN/122-186              .............GT.....GVVEFVRKEDMTYAVRKLDN.T...KFRSHNOP3_YEAST/202-270              ........TRDFDGT.....GALEFPSEEILVEALERLNN.I...EFRGSU2AG_HUMAN/67-142               .......LGDHLVGN.....VYVKFRREEDAEKAVIDLNN.R...WFNGQD111_ARATH/285-364              .......ITEPNFPVHEAVRIFVQFSRPEETTKALVDLDG.R...YFGGRPR24_YEAST/43-111               .......SLKKNFRF.....ARIEFARYDGALAAIT.KTH.K...VVGQNMODU_DROME/177-246              .........LNGNKS.....VLIAFDTSTGAEAVLQAKPKAL...TLGDNSSB1_YEAST/39-114               ...EHTDGHIPASKH.....ALVKFPTKIDFDNIKENYDT.K...VVKDRRN12_YEAST/200-267              .......PTAANNNV.....AKVRYRSFRGAISAKNCVSG.I...EIHNTPTB_HUMAN/61-128                ............KNQ.....AFIEMNTEEAANTMVN.YYT.SVTPVLRGQLA_HUMAN/113-182                ......TLHKAFKGS.....IFVVFDSIESAKKFVE.TPG.Q...KYKETLA_DROME/151-225                H.YDKPTKSYKFKGS.....IFLTFETKDQAKAFLE.QEK.I...VYKERPR24_YEAST/119-190              .......RFNTSRRF.....AYIDVTSKEDARYCVEKLNG.L...KIEGYIF39_SCHPO/41-124               ..EKNGK..KMSLGL.....VFADFENVDGADLCVQELDGKQ...ILKNHYIS5_YEAST/33-104               ALKIYIS1_YEAST/66-136               KIAVRN15_YEAST/20-91                FLKCCST2_HUMAN/18-89                ALRVNSR1_YEAST/269-340              PVRLIF4B_HUMAN/98-168               RIRVTIA1_HUMAN/108-179              QIRTPUB1_YEAST/163-234              PLRINAM8_YEAST/165-237              AIKVRT19_ARATH/33-104               NISVNSR1_YEAST/170-241              PINCPES4_YEAST/93-164               EIRIPABP_DROME/4-75                 PIRINOP4_YEAST/28-98                ILRVROC5_NICSY/219-290              PLRLROC5_NICSY/116-187              TVKVROC3_NICSY/99-170               LLTVGBP2_YEAST/221-291              VLEVPABP_SCHPO/263-333              KLYVPABP_DROME/183-254              SLYVPABP_DROME/92-162               KVYVSFR3_HUMAN/12-78                RVRVSR55_DROME/5-68                 RVVVSFR1_HUMAN/17-85                RLRVSFR2_CHICK/16-87                ELRVROG_HUMAN/10-81                 AIKVTRA2_DROME/99-170               RIRVROC_HUMAN/18-82                 VLDINONA_DROME/304-369              QLRVRU17_DROME/104-175              RVLVTIA1_HUMAN/216-281              VVKCTIA1_HUMAN/9-78                 EVKVPUB1_YEAST/76-146               IVKISXL_DROME/213-285               QPLSELAV_DROME/250-322              TDPISXL_DROME/127-198               RLKVELV4_HUMAN/48-119               TIKVMSSP_HUMAN/31-102               KAKQELAV_DROME/404-475              VLQVSQD_DROME/138-208               EVDVROA1_BOVIN/106-176              NCEVCABA_MOUSE/161-231              KCEISQD_DROME/58-128                KVDPRB97_DROME/34-104               TVEAGR10_BRANA/8-79                 TITVCABA_MOUSE/77-147               VIDPSFPQ_HUMAN/373-443              TTPRNONA_DROME/378-448              ASLRNOP3_YEAST/127-190              PLEVGBP2_YEAST/124-193              KLMVU2AF_SCHPO/312-383              KLHAU2AF_HUMAN/261-332              KLLVNUCL_CHICK/283-352              EIKLMODU_DROME/342-410              EWKLRU2B_HUMAN/9-81                 PMRIRU1A_HUMAN/12-84                PMRIPUB1_YEAST/342-407              NLRTPTB_HUMAN/186-253               CCTLEWS_HUMAN/363-442               KLKVARP2_PLAFA/364-438              YLKVYHH5_YEAST/315-384              TIWVPES4_YEAST/305-374              KLLVYHC4_YEAST/348-415              TMHVPR24_YEAST/212-284              EISVMODU_DROME/422-484              PIFIRNP1_YEAST/37-109               KIVIGBP2_YEAST/351-421              SLQINOP4_YEAST/292-363              LIGDMEI2_SCHPO/197-265              LLYFIF39_YEAST/79-157               RLFLROF_HUMAN/113-183               YIEVMODU_DROME/260-326              FITVWHI3_YEAST/540-614              TVSSCPO_DROME/453-526               PQTIRU2B_HUMAN/153-220              AMKIRU1A_HUMAN/210-276              NAMKRU1A_YEAST/229-293              NDVTSFR1_HUMAN/122-186              EGETNOP3_YEAST/202-270              VITVU2AG_HUMAN/67-142               PIHAD111_ARATH/285-364              TVRAPR24_YEAST/43-111               EIIVMODU_DROME/177-246              VLSVSSB1_YEAST/39-114               EIHIRN12_YEAST/200-267              VLHIPTB_HUMAN/61-128                PIYILA_HUMAN/113-182                DLLILA_DROME/151-225                ELLRPR24_YEAST/119-190              TLVTIF39_SCHPO/41-124               TFVV//

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