readme.txt

fcm on mtxfcm on mtx

This file describe the content of fcm.ZIP

Notations used
X = dataset of size (M,N)
M = number of experiments
N = numbre of genes
K = number of clusters
mub = upper bound value of the fuzzy parameter

file			description
calcDataDist.m	compute the vector of size [N(N-1)/2,1] containing distances 
			between all pair of genes using the dataset
			(computionally expensive for large N)
calcMub.m		compute the upper bound value of fuzzy parameter from the
			dataset
calcStatYm.m	compute mean, std, cv from the [N(N-1)/2] distances vector
fcm.m			compute the centroids and the fuzzy partition matrix
fcm_calcC.m		used by fcm.m
fcm_calcD.m		used by fcm.m
fcm_calcU.m		used by fcm.m
fcm_dataInitC.m	used by fcm.m
fcm_evalJ.m		used by fcm.m
searchMub.m		compute the upper bound value of the fuzzy parameter from
			the [N(N-1)/2,1] vector of distances

NB :	every function has its own help which can be obtained by typing "help name"
	where "name" is the function, e.g. "help fcm"