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<A HREF="#_D_">D</A> <A HREF="#_E_">E</A> <A HREF="#_G_">G</A> <A HREF="#_L_">L</A> <A HREF="#_M_">M</A> <A HREF="#_N_">N</A> <A HREF="#_O_">O</A> <A HREF="#_S_">S</A> <A HREF="#_T_">T</A> <A HREF="#_W_">W</A> <HR>
<A NAME="_D_"><!-- --></A><H2>
<B>D</B></H2>
<DL>
<DT><A HREF="./Edge.html#density"><B>density</B></A> -
Variable in class <A HREF="./Edge.html" title="class in <Unnamed>">Edge</A>
<DD>Edge density = <code>weight / (startNode.weight*endNode.weight)</code>.
</DL>
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<A NAME="_E_"><!-- --></A><H2>
<B>E</B></H2>
<DL>
<DT><A HREF="./Edge.html" title="class in <Unnamed>"><B>Edge</B></A> - Class in <A HREF="./package-summary.html"><Unnamed></A><DD>Weighted graph edge.<DT><A HREF="./Edge.html#Edge(Node, Node, double)"><B>Edge(Node, Node, double)</B></A> -
Constructor for class <A HREF="./Edge.html" title="class in <Unnamed>">Edge</A>
<DD>Initializes the attributes.
<DT><A HREF="./Edge.html#endNode"><B>endNode</B></A> -
Variable in class <A HREF="./Edge.html" title="class in <Unnamed>">Edge</A>
<DD>End node.
<DT><A HREF="./OptimizerModularity.html#execute(java.util.List, java.util.List, boolean)"><B>execute(List<Node>, List<Edge>, boolean)</B></A> -
Method in class <A HREF="./OptimizerModularity.html" title="class in <Unnamed>">OptimizerModularity</A>
<DD>Computes a clustering of a given graph by maximizing the Modularity.
</DL>
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<A NAME="_G_"><!-- --></A><H2>
<B>G</B></H2>
<DL>
<DT><A HREF="./GraphFrame.html" title="class in <Unnamed>"><B>GraphFrame</B></A> - Class in <A HREF="./package-summary.html"><Unnamed></A><DD>Dialog with a simple graph visualization, displaying graph nodes as circles of specified sizes and colors at specified positions.<DT><A HREF="./GraphFrame.html#GraphFrame(java.util.Map, java.util.Map)"><B>GraphFrame(Map<Node, double[]>, Map<Node, Integer>)</B></A> -
Constructor for class <A HREF="./GraphFrame.html" title="class in <Unnamed>">GraphFrame</A>
<DD>Constructs the dialog.
</DL>
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<A NAME="_L_"><!-- --></A><H2>
<B>L</B></H2>
<DL>
<DT><A HREF="./LinLogLayout.html" title="class in <Unnamed>"><B>LinLogLayout</B></A> - Class in <A HREF="./package-summary.html"><Unnamed></A><DD>LinLogLayout is a simple program for computing graph layouts (positions of the nodes of a graph in two- or three-dimensional space) and graph clusterings for visualization and knowledge discovery.<DT><A HREF="./LinLogLayout.html#LinLogLayout()"><B>LinLogLayout()</B></A> -
Constructor for class <A HREF="./LinLogLayout.html" title="class in <Unnamed>">LinLogLayout</A>
<DD>
</DL>
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<A NAME="_M_"><!-- --></A><H2>
<B>M</B></H2>
<DL>
<DT><A HREF="./LinLogLayout.html#main(java.lang.String[])"><B>main(String[])</B></A> -
Static method in class <A HREF="./LinLogLayout.html" title="class in <Unnamed>">LinLogLayout</A>
<DD>Reads a graph from a specified input file, computes a layout and a clustering, writes the layout and the clustering into a specified output file, and displays them in a dialog.
<DT><A HREF="./MinimizerBarnesHut.html#minimizeEnergy(java.util.Map, int)"><B>minimizeEnergy(Map<Node, double[]>, int)</B></A> -
Method in class <A HREF="./MinimizerBarnesHut.html" title="class in <Unnamed>">MinimizerBarnesHut</A>
<DD>Iteratively minimizes energy using the Barnes-Hut algorithm.
<DT><A HREF="./MinimizerClassic.html#minimizeEnergy(java.util.Map, int)"><B>minimizeEnergy(Map<Node, double[]>, int)</B></A> -
Method in class <A HREF="./MinimizerClassic.html" title="class in <Unnamed>">MinimizerClassic</A>
<DD>Iteratively minimizes energy using the Barnes-Hut algorithm.
<DT><A HREF="./MinimizerBarnesHut.html" title="class in <Unnamed>"><B>MinimizerBarnesHut</B></A> - Class in <A HREF="./package-summary.html"><Unnamed></A><DD>Minimizer for the LinLog energy model and its generalizations, for computing two- and three-dimensional graph layouts.<DT><A HREF="./MinimizerBarnesHut.html#MinimizerBarnesHut(java.util.Collection, java.util.Collection, double, double, double)"><B>MinimizerBarnesHut(Collection<Node>, Collection<Edge>, double, double, double)</B></A> -
Constructor for class <A HREF="./MinimizerBarnesHut.html" title="class in <Unnamed>">MinimizerBarnesHut</A>
<DD>Initializes the attributes.
<DT><A HREF="./MinimizerClassic.html" title="class in <Unnamed>"><B>MinimizerClassic</B></A> - Class in <A HREF="./package-summary.html"><Unnamed></A><DD>Minimizer for the LinLog energy model and its generalizations, for computing graph layouts with 2 or more dimensions.<DT><A HREF="./MinimizerClassic.html#MinimizerClassic(java.util.Collection, java.util.Collection, double, double, double, int)"><B>MinimizerClassic(Collection<Node>, Collection<Edge>, double, double, double, int)</B></A> -
Constructor for class <A HREF="./MinimizerClassic.html" title="class in <Unnamed>">MinimizerClassic</A>
<DD>Initializes the attributes.
</DL>
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<A NAME="_N_"><!-- --></A><H2>
<B>N</B></H2>
<DL>
<DT><A HREF="./Node.html#name"><B>name</B></A> -
Variable in class <A HREF="./Node.html" title="class in <Unnamed>">Node</A>
<DD>Node name.
<DT><A HREF="./Node.html" title="class in <Unnamed>"><B>Node</B></A> - Class in <A HREF="./package-summary.html"><Unnamed></A><DD>Weighted graph node.<DT><A HREF="./Node.html#Node(java.lang.String, double)"><B>Node(String, double)</B></A> -
Constructor for class <A HREF="./Node.html" title="class in <Unnamed>">Node</A>
<DD>Initializes the attributes.
</DL>
<HR>
<A NAME="_O_"><!-- --></A><H2>
<B>O</B></H2>
<DL>
<DT><A HREF="./OptimizerModularity.html" title="class in <Unnamed>"><B>OptimizerModularity</B></A> - Class in <A HREF="./package-summary.html"><Unnamed></A><DD>Optimizer for a generalization of Newman and Girvan's Modularity measure, for computing graph clusterings.<DT><A HREF="./OptimizerModularity.html#OptimizerModularity()"><B>OptimizerModularity()</B></A> -
Constructor for class <A HREF="./OptimizerModularity.html" title="class in <Unnamed>">OptimizerModularity</A>
<DD>
</DL>
<HR>
<A NAME="_S_"><!-- --></A><H2>
<B>S</B></H2>
<DL>
<DT><A HREF="./Edge.html#startNode"><B>startNode</B></A> -
Variable in class <A HREF="./Edge.html" title="class in <Unnamed>">Edge</A>
<DD>Start node.
</DL>
<HR>
<A NAME="_T_"><!-- --></A><H2>
<B>T</B></H2>
<DL>
<DT><A HREF="./Edge.html#toString()"><B>toString()</B></A> -
Method in class <A HREF="./Edge.html" title="class in <Unnamed>">Edge</A>
<DD>Returns a string representation of the object.
<DT><A HREF="./Node.html#toString()"><B>toString()</B></A> -
Method in class <A HREF="./Node.html" title="class in <Unnamed>">Node</A>
<DD>Returns a string representation of the object.
</DL>
<HR>
<A NAME="_W_"><!-- --></A><H2>
<B>W</B></H2>
<DL>
<DT><A HREF="./Edge.html#weight"><B>weight</B></A> -
Variable in class <A HREF="./Edge.html" title="class in <Unnamed>">Edge</A>
<DD>Edge weight.
<DT><A HREF="./Node.html#weight"><B>weight</B></A> -
Variable in class <A HREF="./Node.html" title="class in <Unnamed>">Node</A>
<DD>Node weight.
</DL>
<HR>
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