betfunc

mri_toolbox是一个工具用来MRI. 来自于SourceForge, 我上传这个软件,希望能结识对医疗软件感兴趣的兄弟.

#!/bin/sh

Usage() {
    echo "Usage: betfunc <inroot> <outroot>"
    exit
}

[ "$1" = "" ] && Usage

if [ _$FSLDIR = _ ] ; then
    FSLDIR=/usr/local/fsl
    export FSLDIR
fi

${FSLDIR}/bin/avwroi $1 ${2}_tmp 0 1
${FSLDIR}/bin/bet ${2}_tmp ${2}_tmp_brain -m -n -f 0.3 > /dev/null 2>&1
${FSLDIR}/bin/avwmaths ${2}_tmp_brain_mask -dil ${2}_mask
${FSLDIR}/bin/avwmaths $1 -mas ${2}_mask $2

/bin/rm -f ${2}_tmp.img ${2}_tmp.hdr ${2}_tmp_brain_mask.img ${2}_tmp_brain_mask.hdr