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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd"><html><head> <title>Description of Contents</title> <meta name="keywords" content="Contents"> <meta name="description" content="MRI_TOOLBOX v2.0"> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> <meta name="generator" content="m2html © 2003 Guillaume Flandin"> <meta name="robots" content="index, follow"> <link type="text/css" rel="stylesheet" href="../m2html.css"></head><body><a name="_top"></a><div><a href="../index.html">Home</a> > <a href="index.html">mri_toolbox</a> > Contents.m</div><!--<table width="100%"><tr><td align="left"><a href="../index.html"><img alt="<" border="0" src="../left.png"> Master index</a></td><td align="right"><a href="index.html">Index for mri_toolbox <img alt=">" border="0" src="../right.png"></a></td></tr></table>--><h1>Contents</h1><h2><a name="_name"></a>PURPOSE <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2><div class="box"><strong>MRI_TOOLBOX v2.0</strong></div><h2><a name="_synopsis"></a>SYNOPSIS <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2><div class="box"><strong>This is a script file. </strong></div><h2><a name="_description"></a>DESCRIPTION <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2><div class="fragment"><pre class="comment"> MRI_TOOLBOX v2.0
Copyright (C) 2004 Darren Weber
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 2
of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software Foundation,
Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
avw_read - read Analyze format data image (*.img)
avw_hdr_read - read Analyze format data header (*.hdr)
avw_img_read - read Analyze format data image (*.img)
avw_img_compose - compose Analyze volume from single slices
avw_hdr_check_datatype - read Analyze format data header (*.hdr)
avw_hdr_make - create Analyze format data header (avw.hdr)
avw_write - write Analyze files (*.img & *.hdr)
avw_hdr_write - write Analyze header file (*.hdr)
avw_img_write - write Analyze image files (*.img)
avw_view - create and navigate ortho views of Analyze 7.5 volume
avw_view_hdr - view and modify Analyze header file
avw_roi - extract a region of interest from avw.img
avw_stats - calculate region of interest stats for avw data
avw_metric - convert image location from CRS to meters
avw_binary - return 0 for avw.img <= thresh, 1 otherwise
avw_smooth - Guassian smoothing
avw_center - find center of a volume
avw_flip - ortho-flip Analyze data image (avw.img)
avw2brainstorm - Convert Analyze struct into BrainStorm file
avw2cor - converts an avw struct to FreeSurfer COR-* files
cor2avw - Read Freesurfer MRI data (COR-001 to COR-256)
cor_img_read - Read Freesurfer format data (COR-001 to COR-256)
mni2tal - MNI to Talairach coordinates (best guess)
mni2tal_matrix - Talairach to MNI coordinates (best guess)
tal2mni - Talairach to MNI coordinates
avw_converter_script - convert byte order of .img files
avw_homogeneity_correction - 2D correction of MRI RF nonuniformity
emse_elec2mri - convert point in head frame to mri coordinates
emse_mri2elec - convert mri coordinates to points in head frame
emse_open_reg - read EMSE/MRVU coregistration matrices
ge_hdr2avw - extract Analyze header from ge struct
ge_hdr_read - read the header info from a GE LX2 or 5.X file
ge_series2avw - convert a GE series to Analyze
ge_series_read - read a volume of images from a GE series
ctf_write_mri - write a CTF .mri file
ctf_make_mri - create a CTF mri struct with zero image
ctf_read_mri - read a CTF .mri file
gui_avw_open - Load & Display Analyze 7.5 data
gui_cor_open - Load & Display FreeSurfer COR-??? data
gui_ge_open - Load & Display MRI data
gui_mri_open - Load & Display MRI data
mri_open - function to call various mri data tools
mri_toolbox_recent - Keep track of mri_toolbox .mat files
mri_updateparent - General GUI data handing for MRI Toolbox</pre></div><!-- crossreference --><h2><a name="_cross"></a>CROSS-REFERENCE INFORMATION <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>This function calls:<ul style="list-style-image:url(../matlabicon.gif)"></ul>This function is called by:<ul style="list-style-image:url(../matlabicon.gif)"></ul><!-- crossreference --><hr><address>Generated on Fri 21-May-2004 12:38:21 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/">m2html</a></strong> © 2003</address></body></html>
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