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mri_toolbox是一个工具用来MRI. 来自于SourceForge, 我上传这个软件,希望能结识对医疗软件感兴趣的兄弟.

<h1>Index for mri_toolbox</h1>

<h2>Matlab files in this directory:</h2>
<table>
<tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="AnalyzeMovie.html">AnalyzeMovie</a></td><td>AnalyzeMovie - Save analyze images to a kine-loop AVI </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="Contents.html">Contents</a></td><td>MRI_TOOLBOX v2.0 </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="CreateObjectMap.html">CreateObjectMap</a></td><td>objectmap = CreateObjectMap ( height, width, depth ) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="DTI.html">DTI</a></td><td>%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="DTIguicode.html">DTIguicode</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="DTIvol.html">DTIvol</a></td><td>DTIVOL M-file for DTIvol.fig </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="DefaultObject.html">DefaultObject</a></td><td>O = DefaultObject ( Name ) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="LoadAVW.html">LoadAVW</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="LoadAVWObjectMap.html">LoadAVWObjectMap</a></td><td>objectmap = LoadAVWObjectMap ( Filename ) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="NewObject.html">NewObject</a></td><td>Index = NewObject ( objectmap, Name ) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="PVC_eqW.html">PVC_eqW</a></td><td>Partial Volume Correction </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="RotateImage.html">RotateImage</a></td><td>RotateImage - Rotates an image by X degrees </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="SaveAVW.html">SaveAVW</a></td><td>SaveAVW ( Filename, avw ) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="SaveAVWObjectMap.html">SaveAVWObjectMap</a></td><td>SaveAVWObjectMap ( Filename, objectmap ) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw2brainstorm.html">avw2brainstorm</a></td><td>avw2brainstorm - Convert Analyze struct into BrainStorm file </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw2cor.html">avw2cor</a></td><td>avw2cor - converts an avw struct to FreeSurfer COR-* files </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw2ctf.html">avw2ctf</a></td><td>mri = avw2ctf(avw) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_binary.html">avw_binary</a></td><td>avw_binary - return 0 for avw.img <= thresh, 1 otherwise </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_center.html">avw_center</a></td><td>avw_center - find center of a volume </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_converter_script.html">avw_converter_script</a></td><td>avw_converter_script - convert byte order of .img files </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_estimate_noise.html">avw_estimate_noise</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_flip.html">avw_flip</a></td><td>AVW_FLIP - ortho-flip Analyze data image (avw.img) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_hdr_check_datatype.html">avw_hdr_check_datatype</a></td><td>avw_hdr_check_datatype - read Analyze format data header (*.hdr) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_hdr_make.html">avw_hdr_make</a></td><td>AVW_HDR_MAKE - Create Analyze format data header (avw.hdr) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_hdr_read.html">avw_hdr_read</a></td><td>avw_hdr_read - read Analyze format data header (*.hdr) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_hdr_write.html">avw_hdr_write</a></td><td>AVW_HDR_WRITE - Write Analyze header file (*.hdr) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_homogeneity_correction.html">avw_homogeneity_correction</a></td><td>avw_homogeneity_correction - 2D correction of MRI RF nonuniformity </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_img_compose.html">avw_img_compose</a></td><td>AVW_IMG_COMPOSE - Compose single slice Analyze files into a volume </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_img_read.html">avw_img_read</a></td><td>avw_img_read - read Analyze format data image (*.img) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_img_read_4d.html">avw_img_read_4d</a></td><td>avw_img_read - read Analyze format data image (*.img) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_img_write.html">avw_img_write</a></td><td>avw_img_write - write Analyze image files (*.img) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_metric.html">avw_metric</a></td><td>AVW_METRIC - Convert image location from CRS to meters </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_montage.html">avw_montage</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_paint.html">avw_paint</a></td><td>script to test vertex to voxel coordinate mapping </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_poi.html">avw_poi</a></td><td>File/function name:  poi.m   (Pixels Of Interest) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_read.html">avw_read</a></td><td>avw_read - read Analyze format data image (*.img) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_roi.html">avw_roi</a></td><td>avw_roi - extract a region of interest from avw.img </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_shrinkwrap.html">avw_shrinkwrap</a></td><td>avw_shrinkwrap - Tesselate the surface of a 3D Analyze 7.5 avw struct </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_smooth.html">avw_smooth</a></td><td>avw_smooth - Guassian smoothing </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_stats.html">avw_stats</a></td><td>avw_stats - calculate region of interest stats for avw data </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_view.html">avw_view</a></td><td>avw_view - create and navigate ortho views of Analyze 7.5 volume </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_view3.html">avw_view3</a></td><td>AVW_VIEW3 - Create slices of Analyze file and overlay surface vertices </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_view_hdr.html">avw_view_hdr</a></td><td>AVW_VIEW_HDR - View and modify Analyze header file </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_view_old.html">avw_view_old</a></td><td>AVW_VIEW - Create and navigate ortho views of Analyze file </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_view_test.html">avw_view_test</a></td><td>AVW_VIEW: Create and navigate ortho views of Analyze file </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_view_v5.html">avw_view_v5</a></td><td>AVW_VIEW - Create and navigate ortho views of Analyze file </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="avw_write.html">avw_write</a></td><td>avw_write - write Analyze files (*.img & *.hdr) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="brik2mgh.html">brik2mgh</a></td><td>BRIK2MGH function to read 3D+time AFNI BRIK </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="convert_mri2brainstorm.html">convert_mri2brainstorm</a></td><td>Script to convert freesurfer analyze files into brainstorm format </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="cor2avw.html">cor2avw</a></td><td>cor2avw - Read Freesurfer MRI data (COR-001 to COR-256) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="cor_img_read.html">cor_img_read</a></td><td>COR_IMG_READ - Read Freesurfer format data (COR-001 to COR-256) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="create_brainstormsubject.html">create_brainstormsubject</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="ctf_make_mri.html">ctf_make_mri</a></td><td>ctf_make_mri - create a CTF mri struct with zero image </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="ctf_read_mri.html">ctf_read_mri</a></td><td>ctf_read_mri - read a CTF .mri file </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="ctf_write_mri.html">ctf_write_mri</a></td><td>ctf_write_mri - write a CTF .mri file </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="emse_elec2mri.html">emse_elec2mri</a></td><td>EMSE_ELEC2MRI - Convert point in head frame to mri coordinates </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="emse_mri2elec.html">emse_mri2elec</a></td><td>EMSE_MRI2ELEC - Convert mri coordinates to points in head frame </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="emse_open_reg.html">emse_open_reg</a></td><td>EMSE_OPEN_REG - Read EMSE/MRVU coregistration matrices </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="extractresults2freesurfer.html">extractresults2freesurfer</a></td><td>Loop over all controls and patients </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="freesurfer_crs2xyz.html">freesurfer_crs2xyz</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="freesurfer_xyz2crs.html">freesurfer_xyz2crs</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="ge_hdr2avw.html">ge_hdr2avw</a></td><td>ge_hdr2avw - extract Analyze header from ge struct </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="ge_hdr_read.html">ge_hdr_read</a></td><td>ge_hdr_read - Reads the header info from a GE LX2 or 5.X file </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="ge_series2avw.html">ge_series2avw</a></td><td>ge_series2avw - converts a GE series to Analyze </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="ge_series_read.html">ge_series_read</a></td><td>ge_series_read - reads a volume of images from a GE series </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="getdicomsgui.html">getdicomsgui</a></td><td>extension=char(input('What extension do you use in your image files?\nPlease type between single quotes (case sensitive)\n')) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="grow.html">grow</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="gui_avw_open.html">gui_avw_open</a></td><td>gui_avw_open - Load & Display Analyze 7.5 data </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="gui_cor_open.html">gui_cor_open</a></td><td>gui_cor_open - Load & Display FreeSurfer COR-??? data </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="gui_ge_open.html">gui_ge_open</a></td><td>gui_ge_open - Load & Display MRI data </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="gui_mri_open.html">gui_mri_open</a></td><td>gui_mri_open - Load & Display MRI data </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="load_cor.html">load_cor</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mesh_3shell_script.html">mesh_3shell_script</a></td><td>mesh_3shell_script </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mni2tal.html">mni2tal</a></td><td>MNI2TAL - MNI to Talairach coordinates (best guess) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mni2tal_matrix.html">mni2tal_matrix</a></td><td>MNI2TAL_MATRIX - Talairach to MNI coordinates (best guess) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mri_open.html">mri_open</a></td><td>mri_open - function to call various mri data tools </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mri_scalp.html">mri_scalp</a></td><td>mri_scalp - Find the scalp surface of an MRI volume </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mri_scalp_mesh.html">mri_scalp_mesh</a></td><td>MRI_SCALP_MESH: Find the scalp surface of an Analyze volume (avw) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mri_toolbox.html">mri_toolbox</a></td><td>mri_toolbox - Graphical user interface (GUI) to various MRI tools </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mri_toolbox_defaults.html">mri_toolbox_defaults</a></td><td>mri_toolbox_defaults - Create, read, write mri_toolbox defaults </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mri_toolbox_doc_make.html">mri_toolbox_doc_make</a></td><td>mri_toolbox_doc_make - script to use m2html to create mri_toolbox documentation </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mri_toolbox_recent.html">mri_toolbox_recent</a></td><td>mri_toolbox_recent - Keep track of mri_toolbox .mat files </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mri_updateparent.html">mri_updateparent</a></td><td>mri_updateparent - General GUI data handing for MRI Toolbox </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="mriphantom.html">mriphantom</a></td><td>MRIPHANTOM - simulated MRI of a Shepp Logan head phantom </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="pifft.html">pifft</a></td><td>PIFFT - Homodyne reconstruciton of partial MRI k-space (Spatial Frequency) data </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="plot3d.html">plot3d</a></td><td>PLOT3D - produces an image of a 3D object </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="shrink.html">shrink</a></td><td>SHRINK - Removes outer zeros of a matrix. </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="siemens_ima_read.html">siemens_ima_read</a></td><td>SIEMENS_IMA_READ - read Siemens .ima data file (*.ima) </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="tal2mni.html">tal2mni</a></td><td>TAL2MNI - Talairach to MNI coordinates </td></tr></table>

<h2>Other Matlab-specific files in this directory:</h2>
<ul style="list-style-image:url(../matlabicon.gif)">
<li>mri_toolbox_defaults.mat</li></ul>
<h2>Subsequent directories:</h2>
<ul style="list-style-image:url(../matlabicon.gif)">
<li>AFNI</li><li>BoFieldDistortionCorrection</li><li>Bruker</li><li>CVS</li><li>GE</li><li>ImROI</li><li>MINC</li><li>MRpulse_seq_diagrams</li><li>NIFTI</li><li>aniso</li><li>clk_thesis_scalp_tesselations</li><li>diffusion</li><li>doc</li><li>doc_m2html</li><li>fmristat</li><li>fsfast</li><li>mrUnfold-5.0</li><li>mri_example_data</li><li>registration</li><li>segmentation</li><li>siemens</li><li>spm dicom</li></ul>

<hr><address>Generated on Fri 21-May-2004 12:38:18 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/">m2html</a></strong> &copy; 2003</address>
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