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<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.util.Set&lt;<A HREF="../../../../../org/semanticweb/kaon2/api/Request.html" title="type parameter in Request">E</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>Request.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Request.html#get(int, int)">get</A></B>(int&nbsp;fromIndex,
    int&nbsp;toIndex)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the window of the result set by considering axioms only from the given ontology.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.util.Set&lt;<A HREF="../../../../../org/semanticweb/kaon2/api/Request.html" title="type parameter in Request">E</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>Request.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Request.html#getAll()">getAll</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the entire result set by considering axioms only from the given and all included ontologies.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.util.Set&lt;<A HREF="../../../../../org/semanticweb/kaon2/api/Request.html" title="type parameter in Request">E</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>Request.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Request.html#getAll(int, int)">getAll</A></B>(int&nbsp;fromIndex,
       int&nbsp;toIndex)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the window of the result set by considering axioms only from the given and all included ontologies.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.util.Set&lt;<A HREF="../../../../../org/semanticweb/kaon2/api/owl/elements/Annotation.html" title="interface in org.semanticweb.kaon2.api.owl.elements">Annotation</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>Ontology.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html#getAnnotations()">getAnnotations</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the annotations of this ontology.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;<A HREF="../../../../../org/semanticweb/kaon2/api/Axiom.html" title="interface in org.semanticweb.kaon2.api">Axiom</A></CODE></FONT></TD>
<TD><CODE><B>KAON2Factory.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Factory.html#getAxiomFromURI(java.lang.String)">getAxiomFromURI</A></B>(java.lang.String&nbsp;uri)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;<A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html" title="interface in org.semanticweb.kaon2.api">Ontology</A></CODE></FONT></TD>
<TD><CODE><B>Ontology.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html#getDeclaringOntology(org.semanticweb.kaon2.api.Axiom)">getDeclaringOntology</A></B>(<A HREF="../../../../../org/semanticweb/kaon2/api/Axiom.html" title="interface in org.semanticweb.kaon2.api">Axiom</A>&nbsp;axiom)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the ontology where the given axiom is declared.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;boolean</CODE></FONT></TD>
<TD><CODE><B>Ontology.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html#getDuplicateAxiomsThrowException()">getDuplicateAxiomsThrowException</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns <code>true</code> if duplicate additions of axioms to this ontology result in an exception.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;<A HREF="../../../../../org/semanticweb/kaon2/api/logic/Term.html" title="interface in org.semanticweb.kaon2.api.logic">Term</A></CODE></FONT></TD>
<TD><CODE><B>Ontology.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html#getModule()">getModule</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the module of this ontology.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>static&nbsp;<A HREF="../../../../../org/semanticweb/kaon2/api/logic/Term.html" title="interface in org.semanticweb.kaon2.api.logic">Term</A></CODE></FONT></TD>
<TD><CODE><B>KAON2Manager.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Manager.html#getModule(java.lang.String, java.net.Proxy)">getModule</A></B>(java.lang.String&nbsp;physicalURI,
          java.net.Proxy&nbsp;proxy)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the module of the ontology with the given physical URI.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.util.Set&lt;<A HREF="../../../../../org/semanticweb/kaon2/api/logic/Term.html" title="interface in org.semanticweb.kaon2.api.logic">Term</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>KAON2Connection.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Connection.html#getModules()">getModules</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the set of modules of all ontologies opened by this connection.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.util.Set&lt;<A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html" title="interface in org.semanticweb.kaon2.api">Ontology</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>KAON2Connection.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Connection.html#getOntologies()">getOntologies</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the set of ontologies open by the connection.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.util.Set&lt;<A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html" title="interface in org.semanticweb.kaon2.api">Ontology</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>KAON2Connection.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Connection.html#getOntologies(org.semanticweb.kaon2.api.logic.Term)">getOntologies</A></B>(<A HREF="../../../../../org/semanticweb/kaon2/api/logic/Term.html" title="interface in org.semanticweb.kaon2.api.logic">Term</A>&nbsp;module)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the set of onotlogies opened by this connection that have the given module.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;<A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html" title="interface in org.semanticweb.kaon2.api">Ontology</A></CODE></FONT></TD>
<TD><CODE><B>KAON2Connection.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Connection.html#getOntology(java.lang.String)">getOntology</A></B>(java.lang.String&nbsp;ontologyURI)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns an ontology with a given ontology URI, provided that it was opened or created before.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;<A HREF="../../../../../org/semanticweb/kaon2/api/formatting/OntologyFormatting.html" title="interface in org.semanticweb.kaon2.api.formatting">OntologyFormatting</A></CODE></FONT></TD>
<TD><CODE><B>Ontology.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html#getOntologyFormatting()">getOntologyFormatting</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the object that describes the formatting of an ontology.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>static&nbsp;java.lang.String</CODE></FONT></TD>
<TD><CODE><B>KAON2Manager.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Manager.html#getOntologyURI(java.lang.String, java.net.Proxy)">getOntologyURI</A></B>(java.lang.String&nbsp;physicalURI,
               java.net.Proxy&nbsp;proxy)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns an ontology URI for given physical URI.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.util.Set&lt;java.lang.String&gt;</CODE></FONT></TD>
<TD><CODE><B>KAON2Connection.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Connection.html#getOntologyURIs()">getOntologyURIs</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the set of logical URIs of all ontologies open by the connection.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;java.lang.Object</CODE></FONT></TD>
<TD><CODE><B>KAON2Connection.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Connection.html#getParameter(java.lang.String)">getParameter</A></B>(java.lang.String&nbsp;parameterName)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the value of the parameter with the given name.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;<A HREF="../../../../../org/semanticweb/kaon2/api/logic/Term.html" title="interface in org.semanticweb.kaon2.api.logic">Term</A></CODE></FONT></TD>
<TD><CODE><B>KAON2Factory.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Factory.html#groundTerm(java.io.Reader, org.semanticweb.kaon2.api.Namespaces)">groundTerm</A></B>(java.io.Reader&nbsp;reader,
           <A HREF="../../../../../org/semanticweb/kaon2/api/Namespaces.html" title="class in org.semanticweb.kaon2.api">Namespaces</A>&nbsp;namespaces)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;<A HREF="../../../../../org/semanticweb/kaon2/api/logic/Term.html" title="interface in org.semanticweb.kaon2.api.logic">Term</A></CODE></FONT></TD>
<TD><CODE><B>KAON2Factory.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/KAON2Factory.html#groundTerm(java.lang.String, org.semanticweb.kaon2.api.Namespaces)">groundTerm</A></B>(java.lang.String&nbsp;string,
           <A HREF="../../../../../org/semanticweb/kaon2/api/Namespaces.html" title="class in org.semanticweb.kaon2.api">Namespaces</A>&nbsp;namespaces)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;boolean</CODE></FONT></TD>
<TD><CODE><B>Cursor.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Cursor.html#hasNext()">hasNext</A></B>()</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns <code>true</code> if there are more objects in the cursor, i.e.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;void</CODE></FONT></TD>
<TD><CODE><B>Ontology.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html#importContentsFrom(java.io.File, org.semanticweb.kaon2.api.ProgressListener)">importContentsFrom</A></B>(java.io.File&nbsp;file,
                   <A HREF="../../../../../org/semanticweb/kaon2/api/ProgressListener.html" title="interface in org.semanticweb.kaon2.api">ProgressListener</A>&nbsp;progressListener)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Exports this ontolgy into specified format.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;void</CODE></FONT></TD>
<TD><CODE><B>Ontology.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html#importContentsFrom(java.io.InputStream, java.lang.String, org.semanticweb.kaon2.api.ProgressListener)">importContentsFrom</A></B>(java.io.InputStream&nbsp;inputStream,
                   java.lang.String&nbsp;physicalURI,
                   <A HREF="../../../../../org/semanticweb/kaon2/api/ProgressListener.html" title="interface in org.semanticweb.kaon2.api">ProgressListener</A>&nbsp;progressListener)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Adds axioms from the supplied input stream into this ontology.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;void</CODE></FONT></TD>
<TD><CODE><B>Ontology.</B><B><A HREF="../../../../../org/semanticweb/kaon2/api/Ontology.html#importContentsFrom(java.io.Reader, java.lang.String, org.semanticweb.kaon2.api.ProgressListener)">importContentsFrom</A></B>(java.io.Reader&nbsp;reader,
                   java.lang.String&nbsp;physicalURI,
                   <A HREF="../../../../../org/semanticweb/kaon2/api/ProgressListener.html" title="interface in org.semanticweb.kaon2.api">ProgressListener</A>&nbsp;progressListener)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Adds the contents from the supplied source into this ontology.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">

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