📄 skelmap.m
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function [skellist,skelptr,skellen] = SkelMap(maxmap)
% SkelMap -- Chain together Ridges of Wavelet Transform
% Usage
% [skellist,skelptr,skellen] = SkelMap(maxmap)
% Inputs
% maxmap matrix MM_RWT
% Outputs
% skellist storage for list of chains
% skelptr vector of length nchain --pointers
% to head of chain
% skellen vector of length nchain -- length of skellists
%
% Description
% A chain is a list of maxima at essentially the same position
% across a range of scales.
% It is identified from the maxmap data structure output by WTMM
% by finding a root at coarse scales and identifying the closest
% maxima at the next finest scale.
% NO PROVISION IS MADE FOR 'terminating' A CHAIN before the
% finest scale is reached.
%
% nchain = len(skellen) chains are found.
% A chain data structure is a list of scale-location pairs
% All chains are stored together in skellist.
% The k-th list begins in skellist at skelptr(k)
% The k-th list has length skellen(k)
%
% See Also
% RWT, MM_RWT, PlotSkelMap, ExtractRidge
%
[n,nscale] = size(maxmap);
noctave = floor(log2(n))-5;
nvoice = nscale/noctave;
nchain = 0;
chains = zeros(size(maxmap));
count = 0;
while any(any(maxmap)), %start new chain
% if rem(nchain,10)==0,
% fprintf('SkelMap: starting chain %i\n',nchain+1),
% end
[i,j] = find(maxmap);
iscale = j(1);
ipos = i(1);
%fprintf('starting new chain #%i at %i,%i\n',nchain, iscale,ipos),
nchain = nchain+1;
chains(nchain,iscale) = ipos;
maxmap(ipos,iscale) = 0;
count = count+1;
while(iscale < nscale) % pursue rest of chain
iscale = iscale+1;
j = find(maxmap(:,iscale))';
circdist = min([ abs(j-ipos) ; abs(j-ipos+n); abs(j-ipos-n) ]);
[dist,pos] = min(circdist);
if ~isempty(pos),
ipos = j(pos(1));
chains(nchain,iscale) = ipos;
%fprintf('%i,%i\n',iscale,ipos),
maxmap(ipos,iscale) = 0;
count = count+1;
else
iscale = nscale;
end
end
end
% packed lists of chain structures
rptr = zeros(1,n);
rlen = zeros(1,n);
pchain = 1; qchain = 0;
store = zeros(1,2*count);
for ch =1:nchain,
% if rem(ch,10)==1,
% fprintf('SkelMap: packing chain %i\n',ch),
% end
rptr(ch) = pchain;
j = find(chains(ch,:));
iscale = j(1);
rlen(ch) = length(j);
%fprintf('chain %i at %i length %i',ch,pchain,rlen(ch)),
ix = iscale:(iscale+rlen(ch)-1);
vec = [ ix ; chains(ch,ix)];
qchain = pchain + (2*rlen(ch)-1);
store(pchain:qchain) = vec(:);
pchain = qchain+1;
end
skelptr = rptr(1:nchain);
skellen = rlen(1:nchain);
skellist = store(1:qchain);
% Written by Maureen Clerc and Jerome Kalifa, 1997
% clerc@cmapx.polytechnique.fr, kalifa@cmapx.polytechnique.fr
%% Part of Wavelab Version 850% Built Tue Jan 3 13:20:39 EST 2006% This is Copyrighted Material% For Copying permissions see COPYING.m% Comments? e-mail wavelab@stat.stanford.edu
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