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<!---#### mast.html created from mast.in by make#### $Id: mast.in 1339 2006-09-21 19:46:28Z tbailey $#### $Log$## Revision 1.4 2006/03/07 23:30:20 nadya## merge branches v3_5_1 and v3_5_2 back to the trunk#### Revision 1.3.6.1 2006/02/23 00:19:49 nadya## enabling styling with js and css#### Revision 1.3 2005/12/09 06:52:56 tbailey## Added detailed instructions for downloading upstream databases.## Put "K12" after E. coli database name to make clear which strain it is.#### Revision 1.2 2005/09/14 00:39:52 nadya## add mast sample sequences#### Revision 1.1 2005/09/01 22:14:34 nadya## create template files to use version automatically###### Revision 1.3 2005/08/20 04:29:22 nadya## rm commented line#### Revision 1.2 2005/08/18 05:14:36 nadya## added email checking#### Revision 1.1.1.1 2005/07/31 20:14:31 nadya## Importing from meme-3.0.14, and adding configure/make---><HTML><HEAD><TITLE>MAST - Submission form</TITLE><script language="javascript" type="text/javascript"><!--function check(form) { var email = form.address.value; var email_verify = form.address_verify.value; if(!email) { alert("Please fill in the \"e-mail address\" field."); return false; } if(!email_verify) { alert("Please fill in the \"Re-enter email address\" field."); return false; } if(!email.match(email_verify)) { alert("Email addresses do not match."); return false; } if(!email_verify.match(email)) { alert("Email addresses do not match."); return false; }}--></script></HEAD><script src="template-css.js" type="text/javascript"></script><body class="body"> <script src="template-header.js" type="text/javascript"></script> <FORM ENCTYPE = "multipart/form-data" METHOD = "POST" ACTION ="cgi-bin/mast.cgi"> <TABLE> <COL WIDTH="20%"> <THEAD VALIGN="CENTER"> <TR> <TD width="350"><img src="images/mast.png" alt="MAST logo"><br> <center> Version @version@ </center> <TD align="left" valign="bottom"><p align="justify">Use this form to submit motifs to <B>MAST</B> to be used in searching a sequence database. Your data will be processed at the <A HREF="http://www.sdsc.edu/">San Diego Supercomputer Center</A> and the results will be sent to you via e-mail. </p> </TR> </TABLE> <fieldset> <legend>Data Submission Form</legend> <nobr> <center> <label class="mainheadingmedium">Required</label> </center> <table align="center"> <tr> <td valign="top"> Your <A HREF="mast-input.html#e-mail"><B>e-mail address:</B></A> <br> <INPUT class="maininput" TYPE = "TEXT" SIZE = 30 NAME = "address"> <br> Re-enter <b>e-mail address:</b> <br> <INPUT class="maininput" TYPE = "TEXT" SIZE = 30 NAME = "address_verify" > <br> Your <A HREF="mast-input.html#motif-file"><B>motif</B></A> file: <B> <INPUT class="maininput" NAME="motifs" TYPE="file"> </B> <BR> <A HREF="examples/sample-motif.dna">Sample DNA motif</A>, right click and "save target as" to download </td> <td valign="top"><A HREF="mast-input.html#databases">Sequence database</A> to search--select <B>one</B> of the following: <br> A <A HREF="mast-databases.html"><B>MAST database</B></A>: <SELECT NAME = "database"> <OPTION SELECTED VALUE = "none none none"> <OPTION VALUE = "none none none"> -----Assorted Databases----- <OPTION VALUE = "alu alu.aa alu.na"> alu <OPTION VALUE = "c_elegans c_elegans.aa c_elegans.na"> C. elegans (coding) <OPTION VALUE = "c_elegans_cosmids none c_elegans_cosmids.na"> C. elegans (all cosmids) <OPTION VALUE = "dicty_gen dicty_gen.aa dicty_gen.na"> D. discoideum (Genbank) <OPTION VALUE = "drosoph drosoph.aa drosoph.na"> Drosophila <OPTION VALUE = "ecoli ecoli.aa ecoli.na"> E. coli <OPTION VALUE = "epd none epd"> epd <OPTION VALUE = "dbest none est"> est <OPTION VALUE = "est_human none est_human"> est (human) <OPTION VALUE = "est_mouse none est_mouse"> est (mouse) <OPTION VALUE = "est_others none est_others"> est (others) <OPTION VALUE = "genpept genpept none"> genpept <OPTION VALUE = "gss none gss"> gss <OPTION VALUE = "htg none htg"> htgs <OPTION VALUE = "kabat kabat.aa kabat.na"> kabat <OPTION VALUE = "mito mito.aa mito.na"> mito <OPTION VALUE = "month month.aa month.na"> month <OPTION VALUE = "nr nr.aa nr.na"> nr <OPTION VALUE = "pdb pdb.aa pdb.na"> pdb <OPTION VALUE = "dbsts none sts"> sts <OPTION VALUE = "yeast yeast.aa yeast.na"> S. cerevisiae <OPTION VALUE = "swissprot swissprot none"> swissprot <OPTION VALUE = "vector none vector"> vector <OPTION VALUE = "none none none"> -----Genbank Single Organism Databases----- <OPTION VALUE = "Aeropyrum_pernix_K1 Aeropyrum_pernix_K1.aa Aeropyrum_pernix_K1.na"> Aeropyrum pernix K1 <OPTION VALUE = "Archaeoglobus_fulgidus Archaeoglobus_fulgidus.aa Archaeoglobus_fulgidus.na"> Archaeoglobus fulgidus <OPTION VALUE = "Aquifex_aeolicus Aquifex_aeolicus.aa Aquifex_aeolicus.na"> Aquifex aeolicus <OPTION VALUE = "Aquifex_aeolicus_ece1 Aquifex_aeolicus_ece1.aa Aquifex_aeolicus_ece1.na"> Aquifex aeolicus ece1 <OPTION VALUE = "Borrelia_burgdorferi Borrelia_burgdorferi.aa Borrelia_burgdorferi.na"> Borrelia burgdorferi <OPTION VALUE = "Borrelia_burgdorferi_11_plasmids Borrelia_burgdorferi_11_plasmids.aa Borrelia_burgdorferi_11_plasmids.na"> Borrelia burgdorferi 11 plasmids <OPTION VALUE = "Bacillus_subtilis Bacillus_subtilis.aa Bacillus_subtilis.na"> Bacillus subtilis <OPTION VALUE = "Chlamydia_trachomatis Chlamydia_trachomatis.aa Chlamydia_trachomatis.na"> Chlamydia trachomatis <OPTION VALUE = "Chlamydia_muridarum Chlamydia_muridarum.aa Chlamydia_muridarum.na"> Chlamydia muridarum <OPTION VALUE = "Chlamydia_pneumoniae Chlamydia_pneumoniae.aa Chlamydia_pneumoniae.na"> Chlamydia pneumoniae <OPTION VALUE = "Chlamydophila_pneumoniae_AR39 Chlamydophila_pneumoniae_AR39.aa Chlamydophila_pneumoniae_AR39.na"> Chlamydophila pneumoniae AR39 <OPTION VALUE = "Chlamydophila_pneumoniae_J138 Chlamydophila_pneumoniae_J138.aa Chlamydophila_pneumoniae_J138.na"> Chlamydophila pneumoniae J138 <OPTION VALUE = "Deinococcus_radiodurans_R1_chromosome_1 Deinococcus_radiodurans_R1_chromosome_1.aa Deinococcus_radiodurans_R1_chromosome_1.na"> Deinococcus radiodurans R1 chromosome 1 <OPTION VALUE = "Escherichia_coli Escherichia_coli.aa Escherichia_coli.na"> Escherichia coli <OPTION VALUE = "Haemophilus_influenzae Haemophilus_influenzae.aa Haemophilus_influenzae.na"> Haemophilus influenzae <OPTION VALUE = "Helicobacter_pylori_26695 Helicobacter_pylori_26695.aa Helicobacter_pylori_26695.na"> Helicobacter pylori 26695 <OPTION VALUE = "Helicobacter_pylori_strain_J99 Helicobacter_pylori_strain_J99.aa Helicobacter_pylori_strain_J99.na"> Helicobacter pylori strain J99 <OPTION VALUE = "Mycoplasma_genitalium Mycoplasma_genitalium.aa Mycoplasma_genitalium.na"> Mycoplasma genitalium <OPTION VALUE = "Methanococcus_jannaschii Methanococcus_jannaschii.aa Methanococcus_jannaschii.na"> Methanococcus jannaschii <OPTION VALUE = "Methanococcus_jannaschii_large_extrachromosomal_element Methanococcus_jannaschii_large_extrachromosomal_element.aa Methanococcus_jannaschii_large_extrachromosomal_element.na"> Methanococcus jannaschii large extrachromosomal element <OPTION VALUE = "Methanococcus_jannaschii_small_extrachromosomal_element Methanococcus_jannaschii_small_extrachromosomal_element.aa Methanococcus_jannaschii_small_extrachromosomal_element.na"> Methanococcus jannaschii small extrachromosomal element <OPTION VALUE = "Mycoplasma_pneumoniae Mycoplasma_pneumoniae.aa Mycoplasma_pneumoniae.na"> Mycoplasma pneumoniae⌨️ 快捷键说明
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