intro.in

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<!---#### intro.html created from intro.in by make#### $Id: intro.in 1339 2006-09-21 19:46:28Z tbailey $#### $Log$## Revision 1.4  2006/03/07 23:30:20  nadya## merge branches v3_5_1 and v3_5_2 back to the trunk#### Revision 1.3.6.1  2006/02/22 20:49:02  nadya## enabling styling with js and css#### Revision 1.3  2005/09/28 19:26:04  wilfred## added MEME forum link#### Revision 1.2  2005/09/28 19:21:42  nadya## rm obsolete reference to process_request.cgi#### Revision 1.1  2005/09/01 22:14:34  nadya## create template files to use version automatically###### Revision 1.2  2005/08/18 05:14:36  nadya## added email checking#### Revision 1.1.1.1  2005/07/31 20:13:10  nadya## Importing from meme-3.0.14, and adding configure/make---><HTML><HEAD><TITLE>MEME - Introduction</TITLE><script src="template-css.js" type="text/javascript"></script></HEAD><body class="body">      <script src="template-header.js" type="text/javascript"></script>      <TABLE>        <TR>          <TD><img src="images/meme.png" alt="MEME logo">          <TD><img src="images/mast.png" alt="MAST logo">        <TR>          <TD><H1>THE MEME/MAST SYSTEM </H1>        <TR>          <TD><H1>Motif Discovery and Search</H1>        <TR>          <TD ALIGN=LEFT><H1>Version @version@</H1>      </TABLE>      <HR>      <H3> The MEME/MAST system allows you to        <OL>          <LI> <A HREF="meme.html">discover</A> motifs (highly conserved regions) in groups of related DNA or protein sequences using <A HREF="meme-intro.html">MEME</A> and,          <LI> <A HREF="mast.html">search</A> sequence databases using motifs using <A HREF="mast-intro.html">MAST</A>.        </OL>      </H3>      <HR>      <UL>        <LI> <B>Authors:</B> The MEME/MAST system was developed by <B><A href="mailto:t.bailey@imb.uq.edu.au">Timothy Bailey</A></B>, <B><A HREF="mailto:elkan@cs.ucsd.edu">Charles Elkan</A></B>, and <B><A HREF="mailto:noble@gs.washington.edu">Bill Noble</A></B> at the <A HREF="http://www-cse.ucsd.edu"> UCSD Computer Science and Engineering</A> department with input from <B><A HREF="mailto:gribskov@purdue.edu"> Michael Gribskov</A></B> at <A HREF="http://www.purdue.edu/">Purdue University</A>.        <LI> <B>Publications:</B> MEME and MAST are described in detail in the <A HREF="papers.html"><B>papers</B></A> available here.        <LI> <B>FAQ:</B> Answers to Frequently Asked Questions about MEME and MAST are given in the <A HREF="general-faq.html"><B>GENERAL FAQ</B></A>.        <LI> <B>User Forum:</B> Visit the <B><A href="http://nbcr.net/forum/viewforum.php?f=5">MEME User Forum</A></B> for online discussions with the MEME support team memebers and other MEME users.	<LI> <B>Email support:</B> <B><A HREF="mailto:meme@nbcr.net">Contact us</A></B> if you have questions that are not answered in the FAQ or User Forum.        <LI> <B>Sample Output:</B> You can see <A HREF="meme-output-example.html"><B>sample MEME output</B></A> or <A HREF="mast-output-example.html"><B>sample MAST output</B></A>.        <LI> <B>Release Notes:</B> Differences between the current release of the MEME/MAST system and earlier releases are described in the <A HREF="release_notes.html"><B>release notes </B></A>.        <LI> <B>Downloads:</B> You can <B><A HREF="meme-download.html">download</A></B> the MEME/MAST software and install it on your own computer. This will allow you to use many features that are not available with the interactive versions of MEME and MAST.        <LI> <B>License:</B> MEME and MAST are copyrighted software and can be <B><A HREF="COPYRIGHT.html">licensed</A></B> for commercial use.        <LI> <B>Meta-MEME:</B> <A HREF="http://metameme.sdsc.edu"> <B>Meta-MEME</B></A> combines motif models from MEME into a hidden Markov model framework for use in searching sequence databases.      </UL><B><font>Developed and maintained by:</font></B><TABLE align="center"><TR><TD><a href="http://infopath.ucsd.edu"><img src="images/ucsd_logo.png" border="0" alt="[UCSD logo]" hspace="10"></a><TD><a href="http://www.sdsc.edu"><img src="images/sdsc_logo.png" border="0" alt="[SDSC logo]" hspace="10"></a><TD><a href="http://www.uq.edu.au"><img src="images/uq_logo.png" border="0" alt="[UQ logo]" hspace="10"></a><TD><a href="http://nbcr.net"><img src="images/nbcr_logo.png" border="0" alt="[NBCR logo]" hspace="10"></a></TR></TABLE><script src="template-footer.js" type="text/javascript"></script></BODY></HTML>

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