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<!---#### meme.html created from meme.in by make#### $Id: meme.in 1339 2006-09-21 19:46:28Z tbailey $#### $Log$## Revision 1.2 2006/03/07 23:30:20 nadya## merge branches v3_5_1 and v3_5_2 back to the trunk#### Revision 1.1.6.1 2006/02/22 20:49:02 nadya## enabling styling with js and css#### Revision 1.1 2005/09/01 22:14:34 nadya## create template files to use version automatically###### Revision 1.4 2005/08/24 05:31:24 nadya## update references to other thml files. use local urls.#### Revision 1.3 2005/08/20 04:29:22 nadya## rm commented line#### Revision 1.2 2005/08/18 05:14:36 nadya## added email checking#### Revision 1.1.1.1 2005/07/31 20:17:33 nadya## Importing from meme-3.0.14, and adding configure/make---><html><head><title>MEME - Submission form</title><script src="template-css.js" type="text/javascript"></script><script language="javascript" type="text/javascript"><!--function check(form) { var email = form.address.value; var email_verify = form.address_verify.value; if(!email) { alert("Please fill in the \"e-mail address\" field."); return false; } if(!email_verify) { alert("Please fill in the \"Re-enter email address\" field."); return false; } if(!email.match(email_verify)) { alert("Email addresses do not match."); return false; } if(!email_verify.match(email)) { alert("Email addresses do not match."); return false; }}--></script></head><body class="body"><script src="template-header.js" type="text/javascript"></script> <form enctype="multipart/form-data" method="post" action="cgi-bin/meme.cgi"> <input type="hidden" name="evt" value="1e100"> <table border="0"> <tr> <td><img src="images/meme.png"><br> <center> Version @version@ </center></td> <td valign="bottom"><p align="justify">Use this form to submit DNA or protein sequences to MEME. MEME will analyze your sequences for similarities among them and produce a description (<a href="meme-intro.html"><b>motif</b></a>) for each pattern it discovers. Your results will be sent to you by e-mail. </p></td> </tr> </table> <fieldset> <legend>Data Submission Form</legend> <nobr> <center> <label class="mainheadingmedium">Required</label> </center> <table align="center"> <tr> <td valign="top"><font> Your <a href=meme-input.html#email><b>e-mail address:</b></A> <br> <input class="maininput" type="text" size=30 name="address"> <br> Re-enter e-mail address: <br> <INPUT class="maininput" TYPE = "TEXT" SIZE = 30 NAME = "address_verify" > <br> <br> Please enter the <A HREF="meme-input.html#sequences"><B>sequences</B></A> which you believe share one or more motifs. The sequences may contain no more than <B>60,000</B> <A HREF="help_alphabet.html"><B>characters</B></A> total in any of a large number of <A HREF="help_format.html"><B>formats</B></A>. <BR> Enter the <A HREF=meme-input.html#filename><B>name of a file</B></A> containing the sequences here: <BR> <INPUT class="maininput" NAME="datafile" TYPE="file"> <BR> <B>or</B><BR> The <A HREF=meme-input.html#actual-sequences><B>actual sequences</B></A> here (<A HREF=examples/At.fa target="_meme">Sample Input Sequences</A>): <BR> <TEXTAREA NAME = "data" ROWS = 5 COLS = 60></TEXTAREA> </font> </td> <td valign="top">How do you think the occurrences of a single motif are <A HREF ="meme-input.html#distribution"> <B>distributed</B></A> among the sequences?<BR> <INPUT class="mainbutton" TYPE = "RADIO" NAME = "dist" VALUE = "oops"> <B>One</B> per sequence<BR> <INPUT class="mainbutton" TYPE = "RADIO" NAME = "dist" VALUE = "zoops" CHECKED> <B>Zero or one</B> per sequence<BR> <INPUT class="mainbutton" TYPE = "RADIO" NAME = "dist" VALUE = "tcm"> <B>Any number</B> of repetitions <br> <br> <font>MEME will find the optimum <A HREF=meme-input.html#width><B>width</B></A> of each motif within the limits you specify here: <BR> <nobr> <INPUT class="maininput" TYPE="TEXT" SIZE=3 NAME = "minw" VALUE=6> <B>Minimum</B> width (>= 2) <br> <INPUT class="maininput" TYPE="TEXT" SIZE=3 NAME = "maxw" VALUE=50> <B>Maximum</B> width (<= 300) <br> <br> <INPUT class="maininput" TYPE="TEXT" SIZE=2 NAME = "nmotifs" VALUE=3> <font> Maximum <A HREF=meme-input.html#nmotifs><B>number of motifs</B></A> to find </font> </td> </tr> </table> <br> <center> <label class="mainheadingmedium">Optional</label> </center> <table align="center"> <tr> <td valign="top" width="260"><font><A HREF=meme-input.html#description><B>Description</B></A> of your sequences:<br> <INPUT class="maininput" TYPE = "TEXT" SIZE = 40 NAME = "subject"> <br> </font> <br> <font>MEME will find the optimum <A HREF=meme-input.html#nsites><B>number of sites</B></A> for each motif within the limits you specify here: </font> <br> <INPUT class="maininput" TYPE="TEXT" SIZE=3 NAME = "minsites" VALUE=""> <B>Minimum</B> sites(>= 2)<br> <INPUT class="maininput" TYPE="TEXT" SIZE=3 NAME = "maxsites" VALUE=""> <B>Maximum</B> sites (<= 300) </td> <td valign="top"><font> <INPUT class="mainbutton" TYPE = "CHECKBOX" NAME = "text" value="-text"> <A HREF="meme-input.html#text"><B>Text</B></A> output format <BR> <INPUT class="mainbutton" TYPE = "CHECKBOX" NAME = "shuffle" value="1"> <A HREF="meme-input.html#shuffle"><B>Shuffle</B></A> sequence letters</font> </p> <p><font><B>For DNA sequences only:</B><BR> <INPUT class="mainbutton" TYPE = "CHECKBOX" NAME = "posonly" value="1"> Search given <A HREF="meme-input.html#posonly"><B>strand</B></A> only <BR> <INPUT class="mainbutton" TYPE = "CHECKBOX" NAME = "pal" value="-pal"> Look for <A HREF="meme-input.html#pal"><B>palindromes</B></A> only </font> </p></td> </tr> </table> <p align="center"> <INPUT class="maininput" TYPE = "SUBMIT" value="Start search" onClick="return check(this.form)">      <INPUT class="maininput" TYPE = "RESET" value="Clear Input"> <P align="center">Please send comments and questions to: <A HREF="mailto:meme@nbcr.net">meme@nbcr.net</A>. </fieldset> </form><table align="center"><tr><td><a href="mast.html">MAST</a></td><td><a href="intro.html">Introduction</a></td><td><a href="general-faq.html">FAQ</a></td><td><a href="https://nbcr.net/forum/viewforum.php?f=5">Forum</a></td><td><a href="release_notes.html">Release Notes</a></td><td><a href="papers.html">Papers</a></td><td><a href="meme-download.html">Download</a></td><td><a href="COPYRIGHT.html">License</a></td></tr></table><script src="template-footer.js" type="text/javascript"></script></body></html>⌨️ 快捷键说明
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