makefile

EM算法的改进

# Makefile.in generated by automake 1.6.3 from Makefile.am.
# website/html/Makefile.  Generated from Makefile.in by configure.

# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
# Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.


SHELL = /bin/sh

srcdir = .
top_srcdir = ../..

prefix = /root
exec_prefix = ${prefix}

bindir = ${exec_prefix}/bin
sbindir = ${exec_prefix}/sbin
libexecdir = ${exec_prefix}/libexec
datadir = ${prefix}/share
sysconfdir = ${prefix}/etc
sharedstatedir = ${prefix}/com
localstatedir = ${prefix}/var
libdir = ${exec_prefix}/lib
infodir = ${prefix}/info
mandir = ${prefix}/man
includedir = ${prefix}/include
oldincludedir = /usr/include
pkgdatadir = $(datadir)/meme
pkglibdir = $(libdir)/meme
pkgincludedir = $(includedir)/meme
top_builddir = ../..

ACLOCAL = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run aclocal-1.6
AUTOCONF = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run autoconf
AUTOMAKE = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run automake-1.6
AUTOHEADER = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run autoheader

am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
INSTALL = /usr/bin/install -c
INSTALL_PROGRAM = ${INSTALL}
INSTALL_DATA = ${INSTALL} -m 644
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_SCRIPT = ${INSTALL}
INSTALL_HEADER = $(INSTALL_DATA)
transform = s,x,x,
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
host_alias = 
host_triplet = i686-pc-linux-gnu

EXEEXT = 
OBJEXT = o
PATH_SEPARATOR = :
AMTAR = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run tar
AWK = gawk
CC = gcc
CONTACT = [e-mail]
DEBUG_FLAGS = 
DEPDIR = .deps
HOSTNAME = localhost.localdomain
INSTALL_STRIP_PROGRAM = ${SHELL} $(install_sh) -c -s
LAMBIN = 
LD = /usr/bin/ld
LIBS = -lm 
MACHID = linux
MAIL = /bin/mail
MAST_PORT = 3013
MAXTIME = 7200
MEME_DB = ${prefix}/db
MEME_DIRECTORY = ${prefix}
MEME_LOGS = ${prefix}/LOGS
MEME_PORT = 3012
MEME_USER = root
MPICC = 
MPIFLAGS = -DPARALLEL -O
MPIINC = 
MPILIBDIR = 
MPITYPE = 
MPI_CMD = 
NPROCS = 2
OPT_FLAGS = -O3
PACKAGE = meme
PERL = /usr/bin/perl
QNAME = 
QSTAT = 
QTYPE = 
RANLIB = ranlib
SED = /bin/sed
SENDMAIL = /usr/sbin/sendmail
SERVER = 
STRIP = 
URL = http://localhost.localdomain/meme
VERSION = 3.5.4
WEBDIR = ${prefix}/web
am__include = include
am__quote = 
install_sh = /mnt/hgfs/linuxshare/meme_3.5.4/config/install-sh

AUTOMAKE_OPTIONS = no-dependencies

SEDSPEC = \
	-e 's%@version@%$(VERSION)%' 


HEAD = head-copyright
TAIL = tail-copyright
JSFILES = \
	template-css.js \
	template-footer.js \
	template-header.js \
	style-default.css


INFILES = intro.in meme.in mast.in 
IN_FORMATTED = ${INFILES:.in=.html}

SUFFIXES = .in .html

#htmldir = $(WEBDIR)
#html_DATA = $(FILES) $(IN_FORMATTED) COPYRIGHT.html

FILES = $(JSFILES) \
	general-faq.html \
	help_alphabet.html \
	help_distribution.html \
	help_format.html \
	job-status.html \
	mast-databases.html \
	mast-faq.html \
	mast-input.html \
	mast-intro.html \
	mast-output-example.html \
	mast-output.html \
	meme-download.html \
	meme-faq.html \
	meme-input.html \
	meme-intro.html \
	meme-install.html \
	meme-output-example.html \
	motif-format.html \
	papers.html \
	release_notes.html 


CLEANFILES = $(IN_FORMATTED) COPYRIGHT.html

EXTRA_DIST = $(FILES) $(INFILES) $(HEAD) $(TAIL) $(JSFILES)
subdir = website/html
mkinstalldirs = $(SHELL) $(top_srcdir)/config/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
depcomp =
am__depfiles_maybe =
DIST_SOURCES =
DATA = $(html_DATA)

DIST_COMMON = Makefile.am Makefile.in
all: all-am

.SUFFIXES:
.SUFFIXES: .in .html
$(srcdir)/Makefile.in:  Makefile.am  $(top_srcdir)/configure.ac $(ACLOCAL_M4)
	cd $(top_srcdir) && \
	  $(AUTOMAKE) --gnu  website/html/Makefile
Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
uninstall-info-am:
htmlDATA_INSTALL = $(INSTALL_DATA)
install-htmlDATA: $(html_DATA)
	@$(NORMAL_INSTALL)
	$(mkinstalldirs) $(DESTDIR)$(htmldir)
	@list='$(html_DATA)'; for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " $(htmlDATA_INSTALL) $$d$$p $(DESTDIR)$(htmldir)/$$f"; \
	  $(htmlDATA_INSTALL) $$d$$p $(DESTDIR)$(htmldir)/$$f; \
	done

uninstall-htmlDATA:
	@$(NORMAL_UNINSTALL)
	@list='$(html_DATA)'; for p in $$list; do \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " rm -f $(DESTDIR)$(htmldir)/$$f"; \
	  rm -f $(DESTDIR)$(htmldir)/$$f; \
	done
tags: TAGS
TAGS:

DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)

top_distdir = ../..
distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)

distdir: $(DISTFILES)
	@list='$(DISTFILES)'; for file in $$list; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
	    dir="/$$dir"; \
	    $(mkinstalldirs) "$(distdir)$$dir"; \
	  else \
	    dir=''; \
	  fi; \
	  if test -d $$d/$$file; then \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
	    fi; \
	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
	  else \
	    test -f $(distdir)/$$file \
	    || cp -p $$d/$$file $(distdir)/$$file \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: check-am
all-am: Makefile $(DATA)

installdirs:
	$(mkinstalldirs) $(DESTDIR)$(htmldir)

install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	  INSTALL_STRIP_FLAG=-s \
	  `test -z '$(STRIP)' || \
	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:

clean-generic:
	-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)

distclean-generic:
	-rm -f Makefile $(CONFIG_CLEAN_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-generic mostlyclean-am

distclean: distclean-am

distclean-am: clean-am distclean-generic

dvi: dvi-am

dvi-am:

info: info-am

info-am:

install-data-am: install-htmlDATA
	@$(NORMAL_INSTALL)
	$(MAKE) $(AM_MAKEFLAGS) install-data-hook

install-exec-am:

install-info: install-info-am

install-man:

installcheck-am:

maintainer-clean: maintainer-clean-am

maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-generic

uninstall-am: uninstall-htmlDATA uninstall-info-am

.PHONY: all all-am check check-am clean clean-generic distclean \
	distclean-generic distdir dvi dvi-am info info-am install \
	install-am install-data install-data-am install-exec \
	install-exec-am install-htmlDATA install-info install-info-am \
	install-man install-strip installcheck installcheck-am \
	installdirs maintainer-clean maintainer-clean-generic \
	mostlyclean mostlyclean-generic uninstall uninstall-am \
	uninstall-htmlDATA uninstall-info-am

.in.html:
	$(SED) $(SEDSPEC) $< > $@

COPYRIGHT.html: $(HEAD) $(top_srcdir)/COPYING
	/bin/cat $(HEAD) $(top_srcdir)/COPYING $(TAIL) > COPYRIGHT.html
#install-data-hook:
#	cd $(WEBDIR); \
#	if [ ! -e index.html ]; then \
#	    ln -s intro.html index.html; \
#	fi
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: