makefile.am

EM算法的改进

## $Id: Makefile.am 1339 2006-09-21 19:46:28Z tbailey $
##
## Process this file with automake to produce Makefile.in
##
## # $Log$
## # Revision 1.5  2005/10/25 21:22:09  nadya
## # add pssm-distr.c to list of sources
## #
## # Revision 1.4  2005/10/07 02:48:45  nadya
## # create a rule for making an *.o file with mpicc
## # use $< in place of $? to compile on SUN
## #
## # Revision 1.3  2005/10/07 02:43:14  nadya
## # *** empty log message ***
## #
## # Revision 1.2  2005/10/01 23:55:05  nadya
## # redefine make's macros COMPILE and LINK in order to compile with
## # correct MPI flags when using mpicc
## #
## # Revision 1.1.1.1  2005/07/31 19:23:53  nadya
## # Importing from meme-3.0.14, and adding configure/make
## #
##

AUTOMAKE_OPTIONS = no-dependencies

# redefine make macros 
CC = $(MPICC)
AM_CFLAGS = $(MPIFLAGS)
INCLUDES = -I../include $(MPIINC)
COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(AM_CFLAGS)
LINK = $(CCLD) $(AM_CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@

bin_PROGRAMS = meme_p
meme_p_SOURCES = \
        ../background.c \
        ../banner.c \
        ../clock.c \
        ../display.c \
        ../discretize.c \
        ../dpalign.c \
        ../em.c  \
        ../gamma.c \
        ../hash.c \
        ../hash_alph.c \
        ../init.c  \
        ../io.c \
        ../justlike.c \
        ../likelihood.c \
        ../llr.c \
        ../logs.c \
        ../logodds.c \
        ../mast-util.c \
        ../meme.c \
        ../meme_util.c \
        ../message.c \
        ../motifs.c \
        ../mp.c \
        ../oops.c \
        ../prior.c  \
        ../pssm-distr.c  \
        ../read_seq_file.c \
        ../regress.c \
        ../seq2theta.c \
        ../starts.c \
        ../subseq7.c \
        ../tcm.c

# need this rule for making object files with mpicc
COMPILE_RULE = $(COMPILE) -c `test -f $? || echo '$(srcdir)/'`$?

%.o: ../%.c
	$(COMPILE_RULE)