makefile

来自「EM算法的改进」· 代码 · 共 613 行 · 第 1/2 页

# Makefile.in generated by automake 1.6.3 from Makefile.am.
# src/parallel/Makefile.  Generated from Makefile.in by configure.

# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
# Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.


SHELL = /bin/sh

srcdir = .
top_srcdir = ../..

prefix = /root
exec_prefix = ${prefix}

bindir = ${exec_prefix}/bin
sbindir = ${exec_prefix}/sbin
libexecdir = ${exec_prefix}/libexec
datadir = ${prefix}/share
sysconfdir = ${prefix}/etc
sharedstatedir = ${prefix}/com
localstatedir = ${prefix}/var
libdir = ${exec_prefix}/lib
infodir = ${prefix}/info
mandir = ${prefix}/man
includedir = ${prefix}/include
oldincludedir = /usr/include
pkgdatadir = $(datadir)/meme
pkglibdir = $(libdir)/meme
pkgincludedir = $(includedir)/meme
top_builddir = ../..

ACLOCAL = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run aclocal-1.6
AUTOCONF = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run autoconf
AUTOMAKE = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run automake-1.6
AUTOHEADER = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run autoheader

am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
INSTALL = /usr/bin/install -c
INSTALL_PROGRAM = ${INSTALL}
INSTALL_DATA = ${INSTALL} -m 644
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_SCRIPT = ${INSTALL}
INSTALL_HEADER = $(INSTALL_DATA)
transform = s,x,x,
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
host_alias = 
host_triplet = i686-pc-linux-gnu

EXEEXT = 
OBJEXT = o
PATH_SEPARATOR = :
AMTAR = ${SHELL} /mnt/hgfs/linuxshare/meme_3.5.4/config/missing --run tar
AWK = gawk

# redefine make macros 
CC = $(MPICC)
CONTACT = [e-mail]
DEBUG_FLAGS = 
DEPDIR = .deps
HOSTNAME = localhost.localdomain
INSTALL_STRIP_PROGRAM = ${SHELL} $(install_sh) -c -s
LAMBIN = 
LD = /usr/bin/ld
LIBS = -lm 
MACHID = linux
MAIL = /bin/mail
MAST_PORT = 3013
MAXTIME = 7200
MEME_DB = ${prefix}/db
MEME_DIRECTORY = ${prefix}
MEME_LOGS = ${prefix}/LOGS
MEME_PORT = 3012
MEME_USER = root
MPICC = 
MPIFLAGS = -DPARALLEL -O
MPIINC = 
MPILIBDIR = 
MPITYPE = 
MPI_CMD = 
NPROCS = 2
OPT_FLAGS = -O3
PACKAGE = meme
PERL = /usr/bin/perl
QNAME = 
QSTAT = 
QTYPE = 
RANLIB = ranlib
SED = /bin/sed
SENDMAIL = /usr/sbin/sendmail
SERVER = 
STRIP = 
URL = http://localhost.localdomain/meme
VERSION = 3.5.4
WEBDIR = ${prefix}/web
am__include = include
am__quote = 
install_sh = /mnt/hgfs/linuxshare/meme_3.5.4/config/install-sh

AUTOMAKE_OPTIONS = no-dependencies
AM_CFLAGS = $(MPIFLAGS)
INCLUDES = -I../include $(MPIINC)
COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(AM_CFLAGS)
LINK = $(CCLD) $(AM_CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@

bin_PROGRAMS = meme_p
meme_p_SOURCES = \
        ../background.c \
        ../banner.c \
        ../clock.c \
        ../display.c \
        ../discretize.c \
        ../dpalign.c \
        ../em.c  \
        ../gamma.c \
        ../hash.c \
        ../hash_alph.c \
        ../init.c  \
        ../io.c \
        ../justlike.c \
        ../likelihood.c \
        ../llr.c \
        ../logs.c \
        ../logodds.c \
        ../mast-util.c \
        ../meme.c \
        ../meme_util.c \
        ../message.c \
        ../motifs.c \
        ../mp.c \
        ../oops.c \
        ../prior.c  \
        ../pssm-distr.c  \
        ../read_seq_file.c \
        ../regress.c \
        ../seq2theta.c \
        ../starts.c \
        ../subseq7.c \
        ../tcm.c


# need this rule for making object files with mpicc
COMPILE_RULE = $(COMPILE) -c `test -f $? || echo '$(srcdir)/'`$?
subdir = src/parallel
mkinstalldirs = $(SHELL) $(top_srcdir)/config/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
bin_PROGRAMS = meme_p$(EXEEXT)
PROGRAMS = $(bin_PROGRAMS)

am_meme_p_OBJECTS = background.$(OBJEXT) banner.$(OBJEXT) \
	clock.$(OBJEXT) display.$(OBJEXT) discretize.$(OBJEXT) \
	dpalign.$(OBJEXT) em.$(OBJEXT) gamma.$(OBJEXT) hash.$(OBJEXT) \
	hash_alph.$(OBJEXT) init.$(OBJEXT) io.$(OBJEXT) \
	justlike.$(OBJEXT) likelihood.$(OBJEXT) llr.$(OBJEXT) \
	logs.$(OBJEXT) logodds.$(OBJEXT) mast-util.$(OBJEXT) \
	meme.$(OBJEXT) meme_util.$(OBJEXT) message.$(OBJEXT) \
	motifs.$(OBJEXT) mp.$(OBJEXT) oops.$(OBJEXT) prior.$(OBJEXT) \
	pssm-distr.$(OBJEXT) read_seq_file.$(OBJEXT) regress.$(OBJEXT) \
	seq2theta.$(OBJEXT) starts.$(OBJEXT) subseq7.$(OBJEXT) \
	tcm.$(OBJEXT)
meme_p_OBJECTS = $(am_meme_p_OBJECTS)
meme_p_LDADD = $(LDADD)
meme_p_DEPENDENCIES =
meme_p_LDFLAGS =

DEFS = -DHAVE_CONFIG_H
DEFAULT_INCLUDES =  -I. -I$(srcdir) -I$(top_builddir)
CPPFLAGS = 
LDFLAGS = 
depcomp =
am__depfiles_maybe =
CCLD = $(CC)
CFLAGS = -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3
DIST_SOURCES = $(meme_p_SOURCES)
DIST_COMMON = Makefile.am Makefile.in
SOURCES = $(meme_p_SOURCES)

all: all-am

.SUFFIXES:
.SUFFIXES: .c .o .obj
$(srcdir)/Makefile.in:  Makefile.am  $(top_srcdir)/configure.ac $(ACLOCAL_M4)
	cd $(top_srcdir) && \
	  $(AUTOMAKE) --gnu  src/parallel/Makefile
Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
install-binPROGRAMS: $(bin_PROGRAMS)
	@$(NORMAL_INSTALL)
	$(mkinstalldirs) $(DESTDIR)$(bindir)
	@list='$(bin_PROGRAMS)'; for p in $$list; do \
	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
	  if test -f $$p \
	  ; then \
	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
	   echo " $(INSTALL_PROGRAM_ENV) $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
	   $(INSTALL_PROGRAM_ENV) $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f; \
	  else :; fi; \
	done

uninstall-binPROGRAMS:
	@$(NORMAL_UNINSTALL)
	@list='$(bin_PROGRAMS)'; for p in $$list; do \
	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
	  rm -f $(DESTDIR)$(bindir)/$$f; \
	done

clean-binPROGRAMS:
	-test -z "$(bin_PROGRAMS)" || rm -f $(bin_PROGRAMS)
background.$(OBJEXT): ../background.c
banner.$(OBJEXT): ../banner.c
clock.$(OBJEXT): ../clock.c
display.$(OBJEXT): ../display.c
discretize.$(OBJEXT): ../discretize.c
dpalign.$(OBJEXT): ../dpalign.c
em.$(OBJEXT): ../em.c
gamma.$(OBJEXT): ../gamma.c
hash.$(OBJEXT): ../hash.c
hash_alph.$(OBJEXT): ../hash_alph.c
init.$(OBJEXT): ../init.c
io.$(OBJEXT): ../io.c
justlike.$(OBJEXT): ../justlike.c
likelihood.$(OBJEXT): ../likelihood.c
llr.$(OBJEXT): ../llr.c
logs.$(OBJEXT): ../logs.c
logodds.$(OBJEXT): ../logodds.c
mast-util.$(OBJEXT): ../mast-util.c
meme.$(OBJEXT): ../meme.c
meme_util.$(OBJEXT): ../meme_util.c
message.$(OBJEXT): ../message.c
motifs.$(OBJEXT): ../motifs.c
mp.$(OBJEXT): ../mp.c
oops.$(OBJEXT): ../oops.c
prior.$(OBJEXT): ../prior.c
pssm-distr.$(OBJEXT): ../pssm-distr.c
read_seq_file.$(OBJEXT): ../read_seq_file.c
regress.$(OBJEXT): ../regress.c
seq2theta.$(OBJEXT): ../seq2theta.c
starts.$(OBJEXT): ../starts.c
subseq7.$(OBJEXT): ../subseq7.c
tcm.$(OBJEXT): ../tcm.c
meme_p$(EXEEXT): $(meme_p_OBJECTS) $(meme_p_DEPENDENCIES) 
	@rm -f meme_p$(EXEEXT)
	$(LINK) $(meme_p_LDFLAGS) $(meme_p_OBJECTS) $(meme_p_LDADD) $(LIBS)

mostlyclean-compile:
	-rm -f *.$(OBJEXT) core *.core

distclean-compile:
	-rm -f *.tab.c

.c.o:
	$(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$<

.c.obj:
	$(COMPILE) -c `cygpath -w $<`

background.o: ../background.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o background.o `test -f '../background.c' || echo '$(srcdir)/'`../background.c

background.obj: ../background.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o background.obj `cygpath -w ../background.c`

banner.o: ../banner.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o banner.o `test -f '../banner.c' || echo '$(srcdir)/'`../banner.c

banner.obj: ../banner.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o banner.obj `cygpath -w ../banner.c`

clock.o: ../clock.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o clock.o `test -f '../clock.c' || echo '$(srcdir)/'`../clock.c

clock.obj: ../clock.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o clock.obj `cygpath -w ../clock.c`

display.o: ../display.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o display.o `test -f '../display.c' || echo '$(srcdir)/'`../display.c

display.obj: ../display.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o display.obj `cygpath -w ../display.c`

discretize.o: ../discretize.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o discretize.o `test -f '../discretize.c' || echo '$(srcdir)/'`../discretize.c

discretize.obj: ../discretize.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o discretize.obj `cygpath -w ../discretize.c`

dpalign.o: ../dpalign.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o dpalign.o `test -f '../dpalign.c' || echo '$(srcdir)/'`../dpalign.c