makefile.in

EM算法的改进

# Makefile.in generated by automake 1.6.3 from Makefile.am.
# @configure_input@

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# Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.

@SET_MAKE@
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exec_prefix = @exec_prefix@

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sbindir = @sbindir@
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localstatedir = @localstatedir@
libdir = @libdir@
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pkgdatadir = $(datadir)/@PACKAGE@
pkglibdir = $(libdir)/@PACKAGE@
pkgincludedir = $(includedir)/@PACKAGE@
top_builddir = ..

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AUTOCONF = @AUTOCONF@
AUTOMAKE = @AUTOMAKE@
AUTOHEADER = @AUTOHEADER@

am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
INSTALL = @INSTALL@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_DATA = @INSTALL_DATA@
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_HEADER = $(INSTALL_DATA)
transform = @program_transform_name@
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
host_alias = @host_alias@
host_triplet = @host@

EXEEXT = @EXEEXT@
OBJEXT = @OBJEXT@
PATH_SEPARATOR = @PATH_SEPARATOR@
AMTAR = @AMTAR@
AWK = @AWK@
CC = @CC@
CONTACT = @CONTACT@
DEBUG_FLAGS = @DEBUG_FLAGS@
DEPDIR = @DEPDIR@
HOSTNAME = @HOSTNAME@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
LAMBIN = @LAMBIN@
LD = @LD@
LIBS = @LIBS@
MACHID = @MACHID@
MAIL = @MAIL@
MAST_PORT = @MAST_PORT@
MAXTIME = @MAXTIME@
MEME_DB = @MEME_DB@
MEME_DIRECTORY = @MEME_DIRECTORY@
MEME_LOGS = @MEME_LOGS@
MEME_PORT = @MEME_PORT@
MEME_USER = @MEME_USER@
MPICC = @MPICC@
MPIFLAGS = @MPIFLAGS@
MPIINC = @MPIINC@
MPILIBDIR = @MPILIBDIR@
MPITYPE = @MPITYPE@
MPI_CMD = @MPI_CMD@
NPROCS = @NPROCS@
OPT_FLAGS = @OPT_FLAGS@
PACKAGE = @PACKAGE@
PERL = @PERL@
QNAME = @QNAME@
QSTAT = @QSTAT@
QTYPE = @QTYPE@
RANLIB = @RANLIB@
SED = @SED@
SENDMAIL = @SENDMAIL@
SERVER = @SERVER@
STRIP = @STRIP@
URL = @URL@
VERSION = @VERSION@
WEBDIR = @WEBDIR@
am__include = @am__include@
am__quote = @am__quote@
install_sh = @install_sh@

AUTOMAKE_OPTIONS = no-dependencies

SEDSPEC = \
	-e 's%@WHICHPERL@%$(PERL)%' \
	-e 's%@PERLMODDIR@%$(perlmoddir)%' \
	-e 's%@MACH_ID@%$(MACHID)%' \
	-e 's%@sendmail@%$(SENDMAIL)%' \
	-e 's%@mail@%$(MAIL)%'\
	-e 's%@LAM_BIN@%$(LAMBIN)%'\
	-e 's%@MPICMD@%$(MPI_CMD)%' \
	-e 's%@MEMEDIR@%$(MEME_DIRECTORY)%' \
	-e 's%@MEMELOGS@%$(MEME_LOGS)%' \
	-e 's%@MEMEDB@%$(MEME_DB)%' \
	-e 's%@HOST_NAME@%$(HOSTNAME)%' \
	-e 's%@MASTPORT@%$(MAST_PORT)%'\
	-e 's%@MEMEPORT@%$(MEME_PORT)%' \
	-e 's%@MEMEUSER@%$(MEME_USER)%' \
	-e 's%@Q_TYPE@%$(QTYPE)%' \
	-e 's%@Q_NAME@%$(NAME)%' \
	-e 's%@MAX_TIME@%$(MAXTIME)%' \
	-e 's%@N_PROCS@%$(NPROCS)%' \
	-e 's%@MPI_TYPE@%$(MPITYPE)%'


CONFIG = meme_config meme_config.csh

@SERVER_TRUE@SCRIPTS_SERVER = \
@SERVER_TRUE@    lrun \
@SERVER_TRUE@    mailer \
@SERVER_TRUE@    memed \
@SERVER_TRUE@    plot-usage \
@SERVER_TRUE@    start-mast \
@SERVER_TRUE@    start-meme \
@SERVER_TRUE@    texit \
@SERVER_TRUE@    update-plot-usage \
@SERVER_TRUE@    usage-reports 


SCRIPTS_CLIENT = \
    download \
    cat_max \
    compare_dates \
    fasta-fetch \
    fasta-get-markov \
    fasta-make-index \
    fasta-shuffle-letters \
    fasta-unique-names \
    make_logodds \
    mast \
    mast-client \
    mast2html \
    meme \
    meme-client \
    meme2html \
    plotgen \
    roc \
    rocket \
    runtests \
    sd \
    transfac2meme \
    update_mast_databases \
    update_meme_tests 


REST = \
    download \
    plot-usage \
    plotgen \
    rocket \
    sd \
    texit \
    usage-reports \
    update_meme_tests  


etcdir = $(prefix)/etc
etc_DATA = $(CONFIG)

perlmoddir = $(libdir)/perl
perlmod_SCRIPTS = convert2html.pl

bin_SCRIPTS = $(SCRIPTS_SERVER) $(SCRIPTS_CLIENT) 
TESTS = runcheck

TXTFILES = \
	cat_max.txt \
	compare_dates.txt \
	fasta-fetch.txt \
	fasta-get-markov.txt \
	fasta-make-index.txt \
	fasta-shuffle-letters.txt \
	fasta-unique-names.txt \
	make_logodds.txt \
	lrun.txt \
	mailer.txt \
	mast-client.txt \
	meme-client.txt \
	meme.txt \
	mast.txt \
	meme_config.txt \
	meme_config.csh.txt \
	start-mast.txt  \
	start-meme.txt  \
	transfac2meme.txt \
	update-plot-usage.txt \
	update_mast_databases.txt \
	memed.txt \
   	runtests.txt \
   	roc.txt


TXT_FORMATTED = ${TXTFILES:.txt=}

CLEANFILES = \
	$(TXT_FORMATTED) \
	convert2html.pl \
	meme2html \
	mast2html 


EXTRA_DIST = \
	$(TXTFILES) \
	$(REST) \
	$(TESTS) \
	convert2html.txt \
	meme2html.pl \
	mast2html.pl 

subdir = scripts
mkinstalldirs = $(SHELL) $(top_srcdir)/config/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
SCRIPTS = $(bin_SCRIPTS) $(perlmod_SCRIPTS)

depcomp =
am__depfiles_maybe =
DIST_SOURCES =
DATA = $(etc_DATA)

DIST_COMMON = README Makefile.am Makefile.in
all: all-am

.SUFFIXES:
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	cd $(top_srcdir) && \
	  $(AUTOMAKE) --gnu  scripts/Makefile
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	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
install-binSCRIPTS: $(bin_SCRIPTS)
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	    $(binSCRIPT_INSTALL) $$d$$p $(DESTDIR)$(bindir)/$$f; \
	  else :; fi; \
	done

uninstall-binSCRIPTS:
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	@list='$(bin_SCRIPTS)'; for p in $$list; do \
	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
	  rm -f $(DESTDIR)$(bindir)/$$f; \
	done
perlmodSCRIPT_INSTALL = $(INSTALL_SCRIPT)
install-perlmodSCRIPTS: $(perlmod_SCRIPTS)
	@$(NORMAL_INSTALL)
	$(mkinstalldirs) $(DESTDIR)$(perlmoddir)
	@list='$(perlmod_SCRIPTS)'; for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  if test -f $$d$$p; then \
	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
	    echo " $(perlmodSCRIPT_INSTALL) $$d$$p $(DESTDIR)$(perlmoddir)/$$f"; \
	    $(perlmodSCRIPT_INSTALL) $$d$$p $(DESTDIR)$(perlmoddir)/$$f; \
	  else :; fi; \
	done

uninstall-perlmodSCRIPTS:
	@$(NORMAL_UNINSTALL)
	@list='$(perlmod_SCRIPTS)'; for p in $$list; do \
	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
	  echo " rm -f $(DESTDIR)$(perlmoddir)/$$f"; \
	  rm -f $(DESTDIR)$(perlmoddir)/$$f; \
	done
uninstall-info-am:
etcDATA_INSTALL = $(INSTALL_DATA)
install-etcDATA: $(etc_DATA)
	@$(NORMAL_INSTALL)
	$(mkinstalldirs) $(DESTDIR)$(etcdir)
	@list='$(etc_DATA)'; for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
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	  $(etcDATA_INSTALL) $$d$$p $(DESTDIR)$(etcdir)/$$f; \
	done

uninstall-etcDATA:
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	@list='$(etc_DATA)'; for p in $$list; do \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " rm -f $(DESTDIR)$(etcdir)/$$f"; \
	  rm -f $(DESTDIR)$(etcdir)/$$f; \
	done
tags: TAGS
TAGS:


check-TESTS: $(TESTS)
	@failed=0; all=0; xfail=0; xpass=0; \
	srcdir=$(srcdir); export srcdir; \
	list='$(TESTS)'; \
	if test -n "$$list"; then \
	  for tst in $$list; do \
	    if test -f ./$$tst; then dir=./; \
	    elif test -f $$tst; then dir=; \
	    else dir="$(srcdir)/"; fi; \
	    if $(TESTS_ENVIRONMENT) $${dir}$$tst; then \
	      all=`expr $$all + 1`; \
	      case " $(XFAIL_TESTS) " in \
	      *" $$tst "*) \
	        xpass=`expr $$xpass + 1`; \
	        failed=`expr $$failed + 1`; \
	        echo "XPASS: $$tst"; \
	      ;; \
	      *) \
	        echo "PASS: $$tst"; \
	      ;; \
	      esac; \
	    elif test $$? -ne 77; then \
	      all=`expr $$all + 1`; \
	      case " $(XFAIL_TESTS) " in \
	      *" $$tst "*) \
	        xfail=`expr $$xfail + 1`; \
	        echo "XFAIL: $$tst"; \
	      ;; \
	      *) \
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	        echo "FAIL: $$tst"; \
	      ;; \
	      esac; \
	    fi; \
	  done; \
	  if test "$$failed" -eq 0; then \
	    if test "$$xfail" -eq 0; then \
	      banner="All $$all tests passed"; \
	    else \
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	    else \
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	    fi; \
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	  echo "$$dashes"; \
	  echo "$$banner"; \
	  echo "$$dashes"; \
	  test "$$failed" -eq 0; \
	else :; fi
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)

top_distdir = ..
distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)

distdir: $(DISTFILES)
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	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
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	    $(mkinstalldirs) "$(distdir)$$dir"; \
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	    dir=''; \
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	  if test -d $$d/$$file; then \
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	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
	    fi; \
	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
	  else \
	    test -f $(distdir)/$$file \
	    || cp -p $$d/$$file $(distdir)/$$file \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
check: check-am
all-am: Makefile $(SCRIPTS) $(DATA)

installdirs:
	$(mkinstalldirs) $(DESTDIR)$(bindir) $(DESTDIR)$(perlmoddir) $(DESTDIR)$(etcdir)

install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	  INSTALL_STRIP_FLAG=-s \
	  `test -z '$(STRIP)' || \
	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:

clean-generic:
	-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)

distclean-generic:
	-rm -f Makefile $(CONFIG_CLEAN_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-generic mostlyclean-am

distclean: distclean-am

distclean-am: clean-am distclean-generic

dvi: dvi-am

dvi-am:

info: info-am

info-am:

install-data-am: install-etcDATA install-perlmodSCRIPTS

install-exec-am: install-binSCRIPTS

install-info: install-info-am

install-man:

installcheck-am:

maintainer-clean: maintainer-clean-am

maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-generic

uninstall-am: uninstall-binSCRIPTS uninstall-etcDATA uninstall-info-am \
	uninstall-perlmodSCRIPTS

.PHONY: all all-am check check-TESTS check-am clean clean-generic \
	distclean distclean-generic distdir dvi dvi-am info info-am \
	install install-am install-binSCRIPTS install-data \
	install-data-am install-etcDATA install-exec install-exec-am \
	install-info install-info-am install-man install-perlmodSCRIPTS \
	install-strip installcheck installcheck-am installdirs \
	maintainer-clean maintainer-clean-generic mostlyclean \
	mostlyclean-generic uninstall uninstall-am uninstall-binSCRIPTS \
	uninstall-etcDATA uninstall-info-am uninstall-perlmodSCRIPTS


convert2html.pl: convert2html.txt
	$(SED) $(SEDSPEC) $? > $@

meme2html: meme2html.pl
	$(SED) $(SEDSPEC) $? > $@

mast2html: mast2html.pl
	$(SED) $(SEDSPEC) $? > $@

cat_max: cat_max.txt 
	$(SED) $(SEDSPEC) $? > $@
compare_dates: compare_dates.txt 
	$(SED) $(SEDSPEC) $? > $@
fasta-fetch: fasta-fetch.txt 
	$(SED) $(SEDSPEC) $? > $@
fasta-get-markov: fasta-get-markov.txt 
	$(SED) $(SEDSPEC) $? > $@
fasta-make-index: fasta-make-index.txt 
	$(SED) $(SEDSPEC) $? > $@
fasta-shuffle-letters: fasta-shuffle-letters.txt 
	$(SED) $(SEDSPEC) $? > $@
fasta-unique-names: fasta-unique-names.txt 
	$(SED) $(SEDSPEC) $? > $@
lrun: lrun.txt 
	$(SED) $(SEDSPEC) $? > $@
make_logodds: make_logodds.txt 
	$(SED) $(SEDSPEC) $? > $@
mailer: mailer.txt 
	$(SED) $(SEDSPEC) $? > $@
mast-client: mast-client.txt 
	$(SED) $(SEDSPEC) $? > $@
meme-client: meme-client.txt 
	$(SED) $(SEDSPEC) $? > $@
mast: mast.txt 
	$(SED) $(SEDSPEC) $? > $@
meme: meme.txt 
	$(SED) $(SEDSPEC) $? > $@
start-mast: start-mast.txt  
	$(SED) $(SEDSPEC) $? > $@
start-meme: start-meme.txt  
	$(SED) $(SEDSPEC) $? > $@
transfac2meme: transfac2meme.txt
	$(SED) $(SEDSPEC) $? > $@
update-plot-usage: update-plot-usage.txt 
	$(SED) $(SEDSPEC) $? > $@
update_mast_databases: update_mast_databases.txt 
	$(SED) $(SEDSPEC) $? > $@
memed: memed.txt
	$(SED) $(SEDSPEC) $? > $@
runtests: runtests.txt
	$(SED) $(SEDSPEC) $? > $@
roc: roc.txt
	$(SED) $(SEDSPEC) $? > $@
meme_config: meme_config.txt
	$(SED) $(SEDSPEC) $? > $@
meme_config.csh: meme_config.csh.txt
	$(SED) $(SEDSPEC) $? > $@
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: