meme_config

来自「EM算法的改进」· 代码 · 共 115 行

#
# meme_config  - created from meme_config.txt by configure
# holds site localization variables for running meme and mast
#
# $Id: meme_config.txt 1339 2006-09-21 19:46:28Z tbailey $
#
# $Log$
# Revision 1.8  2006/03/08 20:50:11  nadya
# merge chamges from v3_5_2 branch
#
# Revision 1.7.4.2  2006/01/24 01:58:17  nadya
# export environ variables
# add variable EXT to handle echo ouput in scripts, differs by platform
#
# Revision 1.7.4.1  2006/01/23 02:05:45  nadya
# change export so it works in sh on solaris
#
# Revision 1.7  2005/10/28 23:48:51  nadya
# set MEME_LOGS and MEME_DB to user provided
# need both environment settings when starting servers.
#
# Revision 1.6  2005/10/07 05:33:55  nadya
# keep uniform name MEME_LOGS throughout scripts.
#
# Revision 1.5  2005/10/05 23:13:14  nadya
# move job.out file into LOGS/
#
# Revision 1.4  2005/10/02 05:40:10  nadya
# add variable for meme-client executable
#
# Revision 1.3  2005/10/02 05:18:22  nadya
# change $bin to $MEME_BIN.
# add variables for meme/mas shell scripts and meme/mast executables.
#
# Revision 1.2  2005/08/12 17:50:30  nadya
# add variables
#
# Revision 1.1  2005/08/09 23:05:55  nadya
# localization file. Holds all the variabls needed for runnign scripts

# installation path
MEME_DIRECTORY=/root
export MEME_DIRECTORY

# installation bin/
MEME_BIN=$MEME_DIRECTORY/bin
export MEME_BIN

# directory where log files for meme/mast servers and the output 
# of the meme/mat programs are kept. 
MEME_LOGS="/root/LOGS"
export MEME_LOGS

# database directory
MEME_DB="/root/db"
export MEME_DB

# UID to start servers
MEME_USER=root

# server scripts
MEME_SERVER=$MEME_BIN/start-meme
MAST_SERVER=$MEME_BIN/start-mast

# port for meme and mast servers and clients
MEME_PORT=3012
MAST_PORT=3013

# executables to use when starting servers. 
# Curernlty, meme and mast are shell scripts.
MEME_SH=meme
MAST_SH=mast

# true binary executables
MEME_EXEC=meme.bin
MAST_EXEC=mast.bin
MEME_CLIENT_EXEC=meme-client.bin

# server hostname
HOST=localhost.localdomain

# number of processors to run MEME jobs on.
nprocs=2

# amount of wall time that jobs may take.  This should
# be 10% larger than $MAXTIME used in cgi-bin/meme.cgi
WALL=7200
maxtime=`expr $WALL + $WALL / 10`

# name of the queue that MEME jobs are submitted to if there is one
queue=""

# Set the type of queueing system. Possible values: sge, pbs.
qsystem=

# place for standard output and error from jobs.
# Can set jobout to /dev/null, but this may not work on some PBS systems
jobout="$MEME_LOGS/job.out"

# MPI type. Possible values : mpich, mpich_mpd and lam.
mpi=

# shell and temporary location used for meme runs. Needed by mpi.
shell='/bin/csh'
tmpdir='$TMPDIR'

# variable for echo output of tests
EXT="@EXT_STR@"

if [ -d $MEME_BIN ]; then
    PATH=$PATH:$MEME_BIN
	export PATH
fi