meme.lipocalin.zoops

EM算法的改进

sequence             FLKPN PK   ET IMGHNI
                       TVT  S       VN S 
                                     Q Y 
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	Motif 2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                    Site      
-------------             ----- ---------            --------------------
ICYA_MANSE                  100  4.03e-19 MTFKFGQRVV NLVPWVLATDYKNYAINYNC DYHPDKKAHS
BBP_PIEBR                    96  1.04e-18 HKLTYGGVTK ENVFNVLSTDNKNYIIGYYC KYDEDKKGHQ
RETB_BOVIN                  101  2.40e-16 WGVASFLQKG NDDHWIIDTDYETFAVQYSC RLLNLDGTCA
MUP2_MOUSE                  105  6.24e-14 AGEYSVTYDG FNTFTIPKTDYDNFLMAHLI NEKDGETFQL
LACB_BOVIN                  105  6.57e-13 PAVFKIDALN ENKVLVLDTDYKKYLLFCME NSAEPEQSLA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
ICYA_MANSE                          4e-19  99_[2]_70
BBP_PIEBR                           1e-18  95_[2]_58
RETB_BOVIN                        2.4e-16  100_[2]_63
MUP2_MOUSE                        6.2e-14  104_[2]_56
LACB_BOVIN                        6.6e-13  104_[2]_54
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 2 width=20 seqs=5
ICYA_MANSE               (  100) NLVPWVLATDYKNYAINYNC  1 
BBP_PIEBR                (   96) ENVFNVLSTDNKNYIIGYYC  1 
RETB_BOVIN               (  101) NDDHWIIDTDYETFAVQYSC  1 
MUP2_MOUSE               (  105) FNTFTIPKTDYDNFLMAHLI  1 
LACB_BOVIN               (  105) ENKVLVLDTDYKKYLLFCME  1 
//

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--------------------------------------------------------------------------------
	Motif 2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 20 n= 808 bayes= 7.32733 E= 1.3e-004 
  -116   -324    -64    181    136   -144    -82   -221   -110   -238   -136    235   -162      0    -39    -57    -86   -222   -289   -199 
  -264   -361     -4   -243   -347   -231    -89   -277   -263    -94   -248    377   -263   -136   -183   -110   -174   -332   -348   -353 
   -66   -251     55    -62   -218   -174    -92    -65     47   -162    -65    -95   -142     12     -3    -58    128    212   -277   -241 
  -126   -208   -290   -239    294   -248    179    -55   -244    -93    -23   -219    151   -123   -126   -139   -115     66   -140    111 
  -163   -256   -286   -240   -117   -258   -187   -104   -233     -2    -61     22   -239   -123   -124   -153     70   -128    496   -172 
  -187   -259   -460   -433   -253   -411   -393    294   -445   -100    -72   -409   -350   -346   -317   -333   -179    284   -423   -403 
  -241   -288   -462   -384   -125   -379   -303    115   -384    294     55   -375     98   -219   -226   -288   -207    -90   -286   -303 
    87   -310    199    -26   -267   -139    -74   -219     69   -226   -114    -38   -135     29     -2    118    -60   -209   -302   -248 
  -207   -284   -375   -406   -362   -318   -321   -234   -360   -351   -189   -221   -300   -234   -236    -21    413   -235   -394   -430 
  -314   -425    368   -126   -416   -331   -261   -375   -424   -423   -332   -101   -381   -278   -298   -284   -333   -389   -419   -420 
  -225   -294   -274   -298     79   -283    -38   -226   -307   -220   -157    120   -267   -192   -179   -191   -229   -254    -84    364 
  -140   -422    109    152   -378   -212   -152   -292    227   -299   -190   -123   -188     11    -34   -125   -141   -275   -395   -345 
  -219   -352   -147   -205   -340   -210    -87   -272     -8   -326   -217    360   -237    -84    -81    -94     66   -308   -341   -333 
  -252   -295   -377   -356    284   -344    -34   -222   -366   -206   -151   -294   -288   -226   -210   -233   -263   -256    -55    339 
   187   -211   -422   -353   -120   -290   -268    186   -351    201     34   -320   -273   -212   -215   -199   -130     -4   -258   -258 
  -245   -306   -430   -410   -197   -384   -360    356   -396     52    173   -359   -346   -288   -286   -287   -197    121   -336   -320 
   101   -261   -102    -53    108    107    -47   -151    -62   -172    -64    119   -120    207     16    -25    -39   -150   -255   -163 
  -159    113   -291   -265    139   -272    185   -163   -283   -165    -93   -236   -215   -167   -141   -152   -187   -189    -63    335 
   -70   -186   -203   -142    -27   -188    -50    -16   -146     73    243     97   -158    -34    -48    101    -41    -46   -169    156 
  -296    492   -486   -201   -375   -433   -397    -94   -465   -327   -236   -427   -408   -348   -325   -347   -285   -273   -475   -467 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 20 nsites= 5 E= 1.3e-004 
 0.000000  0.000000  0.000000  0.400000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.600000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.400000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.400000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.600000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.600000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.200000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.800000 
 0.000000  0.000000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000  0.600000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.600000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.600000 
 0.400000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000 
 0.200000  0.000000  0.000000  0.000000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.600000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.200000  0.200000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.200000 
 0.000000  0.600000  0.000000  0.200000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 regular expression
--------------------------------------------------------------------------------
[ENF][NDL][VDKT][FHPV][WLNT][VI][LIP][DAKS]TD[YN][KDE][NKT][YF][ALI][ILMV][AFGNQ][YCH][LMNSY][CEI]
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Time  1.71 secs.

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SUMMARY OF MOTIFS
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	Combined block diagrams: non-overlapping sites with p-value < 0.0001
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SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
ICYA_MANSE                       2.57e-36  6_[1(2.61e-24)]_67_[2(4.03e-19)]_70
LACB_BOVIN                       2.84e-24  14_[1(2.99e-18)]_64_[2(6.57e-13)]_54
BBP_PIEBR                        2.77e-36  5_[1(1.34e-24)]_64_[2(1.04e-18)]_58
RETB_BOVIN                       7.96e-29  3_[1(1.83e-19)]_71_[2(2.40e-16)]_63
MUP2_MOUSE                       6.18e-24  16_[1(6.78e-17)]_62_[2(6.24e-14)]_56
--------------------------------------------------------------------------------

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Stopped because nmotifs = 2 reached.
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CPU: chromo.imb.uq.edu.au

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