meme.lipocalin.zoops

来自「EM算法的改进」· ZOOPS 代码 · 共 407 行 · 第 1/3 页

LACB_BOVIN                          3e-18  14_[1]_138
MUP2_MOUSE                        6.8e-17  16_[1]_138
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 1 width=26 seqs=5
BBP_PIEBR                (    6) GACPEVKPVDNFDWSNYHGKWWEVAK  1 
ICYA_MANSE               (    7) GYCPDVKPVNDFDLSAFAGAWHEIAK  1 
RETB_BOVIN               (    4) CRVSSFRVKENFDKARFAGTWYAMAK  1 
LACB_BOVIN               (   15) QALIVTQTMKGLDIQKVAGTWYSLAM  1 
MUP2_MOUSE               (   17) HAEEASSTGRNFNVEKINGEWHTIIL  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 26 n= 778 bayes= 8.22029 E= 5.0e-006 
   -99    144   -149   -133   -258    269    220   -210   -126   -235   -128    -87   -179    196    -34    -79   -105   -210   -298   -234 
   289   -172   -248   -188   -180   -145   -157   -164   -148   -197    -97   -189   -221    -78    149    -45   -104   -119   -261     74 
   -84    312   -314     44   -111   -230   -180     37   -244     92     33   -225   -204   -122   -125   -133    -66    135   -214   -197 
   -92   -302   -187     36   -265   -208   -155     70   -160   -213   -130   -170    388    -48    -75     72   -103   -192   -332   -302 
   115   -283     98    109   -244   -150    -77   -177    -69   -197    -86    -77   -126     44      3    111    -51     64   -286   -236 
   -68   -167   -316   -260    114   -226   -183     30   -258    -72     12   -219   -200   -135   -133     95    164    231   -223   -188 
  -144   -348   -210   -120   -327   -216    -91   -243    199   -239   -133   -129   -193    225    247    114   -111   -243   -308   -284 
   -93   -241   -296   -256   -247   -224   -228   -113   -258   -190   -106   -229    361   -141   -151    -73    242     71   -330   -325 
   -63   -187   -232   -163   -140     75   -134     22     37    -77    241   -166   -172    -51    -40   -100    -53    221   -226   -208 
   -71   -310    103    103   -254   -142    -60   -205     81   -207    -94    124   -126     52    201    -34    -50   -195   -285   -234 
  -242   -375     92   -196   -382     91    -98   -352   -243   -408   -311    349   -242   -122   -182    -80   -157   -389   -397   -351 
  -318   -290   -467   -456    425   -423   -363   -172   -484    -47   -115   -430   -331   -373   -362   -296   -352   -245   -202   -103 
  -301   -418    363   -117   -408   -310   -244   -367   -403   -415   -323    -21   -370   -260   -284   -260   -313   -381   -414   -410 
  -107   -180   -350   -287   -106   -249   -200    251     -5     95     46   -249   -221   -152   -148   -153    -77    137    217   -191 
    96   -298    -78    114   -258   -152    -75   -202    -65   -209    -96    -73   -125    216      7    200    -40   -190   -293   -244 
    64   -339   -187   -114   -314   -206    -99   -238    222   -242   -133    101   -185     18    221   -102   -106   -240   -310   -282 
  -180   -226   -378   -340    342   -310   -122     98   -351    -88    -39   -305   -258   -227   -212   -200   -176     43   -146    170 
   273   -215   -127   -140   -272   -123    196   -223   -154   -247   -141    118   -194    -56    -71    -37    -96   -174   -321   -276 
  -198   -392   -300   -366   -445    397   -328   -418   -373   -473   -335   -252   -325   -311   -239   -220   -319   -402   -398   -452 
    89   -295    -91    104   -246   -153    -67   -184     77   -196    -82    -70   -123     52     29    -26    223   -176   -280   -234 
  -388   -388   -438   -441   -134   -384   -353   -366   -445   -246   -240   -397   -380   -303   -275   -375   -362   -359    569   -207 
  -290   -318   -383   -376     74   -360    354   -251   -386   -230   -173   -259   -307   -176   -201   -252   -277   -283    285    292 
   106   -271    -97    173   -260   -150    -93   -197    -87   -214   -101    -85   -134     26    -13    137    156   -183   -299   -255 
  -245   -306   -430   -410   -197   -384   -360    356   -396     52    173   -359   -346   -288   -286   -287   -197    121   -336   -320 
   328   -140   -376   -329   -260   -140   -310     73   -352   -200   -114   -318   -308   -242   -222    -45   -138    -73   -332   -364 
  -191   -312   -315   -227   -234   -288   -184   -127    276     37    218   -223   -256    -77     45   -195   -163   -176   -307   -303 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 26 nsites= 5 E= 5.0e-006 
 0.000000  0.200000  0.000000  0.000000  0.000000  0.400000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.600000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.200000 
 0.000000  0.400000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000 
 0.200000  0.000000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.200000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.200000  0.400000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000  0.200000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.000000  0.400000  0.200000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.200000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000 
 0.000000  0.000000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.200000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.200000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.600000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.800000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.800000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.200000  0.000000 
 0.200000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000 
 0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.200000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.200000 
 0.600000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.200000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.400000 
 0.200000  0.000000  0.000000  0.400000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.200000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.400000  0.000000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000 
 0.800000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.600000  0.200000  0.200000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 regular expression
--------------------------------------------------------------------------------
[GCHQ][ARY][CELV][PEIS][ADESV][VFST][KQRS][PTV][VGKM][DEKNR][NDG][FL][DN][IKLVW][SAEQ][KANR][FIVY][AHN]G[TAEK]W[HYW][EAST][ILMV][AI][KLM]
--------------------------------------------------------------------------------




Time  1.04 secs.

********************************************************************************


********************************************************************************
MOTIF  2	width =   20   sites =   5   llr = 195   E-value = 1.3e-004
********************************************************************************
--------------------------------------------------------------------------------
	Motif 2 Description
--------------------------------------------------------------------------------
Simplified        A  :::::::2::::::4:2:::
pos.-specific     C  :::::::::::::::::2:6
probability       D  :22::::4:a:2::::::::
matrix            E  4::::::::::2:::::::2
                  F  2::4:::::::::4::2:::
                  G  ::::::::::::::::2:::
                  H  :::2:::::::::::::2::
                  I  :::::42:::::::24:::2
                  K  ::2::::2:::62:::::::
                  L  :2::2:6:::::::42::2:
                  M  :::::::::::::::2::2:
                  N  46::2:::::2:6:::2:2:
                  P  :::2::2:::::::::::::
                  Q  ::::::::::::::::2:::
                  R  ::::::::::::::::::::
                  S  :::::::2::::::::::2:
                  T  ::2:2:::a:::2:::::::
                  V  ::42:6:::::::::2::::
                  W  ::::4:::::::::::::::
                  Y  ::::::::::8::6:::62:

         bits    5.9                     
                 5.3                     
                 4.7         *           
                 4.1         **          
Information      3.5         ***  *   * *
content          2.9  * ***  *** **   * *
(56.1 bits)      2.3 ** **** ******** ***
                 1.8 ********************
                 1.2 ********************
                 0.6 ********************
                 0.0 --------------------

Multilevel           ENVFWVLDTDYKNYAIAYLC
consensus            NDDHLIIA  NDKFLLFCME