📄 meme.ino_up800.zoops
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-------------------------------------------------------------------------------- Motif 1 regular expression--------------------------------------------------------------------------------A[CAG]T[TC]TTCACATG[CG][CA][CG]C--------------------------------------------------------------------------------Time 7.22 secs.****************************************************************************************************************************************************************MOTIF 2 width = 21 sites = 6 llr = 108 E-value = 8.3e+001********************************************************************************-------------------------------------------------------------------------------- Motif 2 Description--------------------------------------------------------------------------------Simplified A :85:2223:7::7::8:::::pos.-specific C 8:32357382:8:852a2328probability G 222853222:::322:::522matrix T :::::::2:2a2::3::827: bits 2.5 * 2.3 * 2.0 * 1.8 * * * * * * *Information 1.5 * * * ** * * *content 1.3 * * * ** * * *(26.0 bits) 1.0 ** **** * **** **** * 0.8 ** **** * *********** 0.5 ******* ************* 0.3 ********************* 0.0 ---------------------Multilevel CAAGGCCACATCACCACTGTCconsensus C CG C G T C sequence ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value--------------------------------------------------------------------------------Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------FAS2 + 710 2.43e-11 GAAGGTTACA CAAGACCACATCACCACTGTC GTGCTTTTCTINO1 - 369 4.85e-10 TGTTGTCCAT CAAGGGCACATCGGCACCGGC CTCATCGTCTOPI3 - 504 8.26e-10 CGAATTATAC GGCGGCGCCATCACTACTGTC GTCCCACCTGACC1 + 135 4.36e-09 AGTCGAAATT CAACCGCTCATTGCCACTCTC TCTACTGCTTCHO1 + 615 1.78e-08 TGAACGTTCA CACGGCACCCTCACGCCTTTG AGCTTTCACAFAS1 + 45 2.39e-08 ACACGAGGTG CAGGCACGGTTCACTACTCCC CTGGCCTCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 block diagrams--------------------------------------------------------------------------------SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM------------- ---------------- -------------FAS2 2.4e-11 709_[+2]_70INO1 4.8e-10 368_[-2]_411OPI3 8.3e-10 503_[-2]_276ACC1 4.4e-09 134_[+2]_645CHO1 1.8e-08 614_[+2]_165FAS1 2.4e-08 44_[+2]_735---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 in BLOCKS format--------------------------------------------------------------------------------BL MOTIF 2 width=21 seqs=6FAS2 ( 710) CAAGACCACATCACCACTGTC 1 INO1 ( 369) CAAGGGCACATCGGCACCGGC 1 OPI3 ( 504) GGCGGCGCCATCACTACTGTC 1 ACC1 ( 135) CAACCGCTCATTGCCACTCTC 1 CHO1 ( 615) CACGGCACCCTCACGCCTTTG 1 FAS1 ( 45) CAGGCACGGTTCACTACTCCC 1 //---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix--------------------------------------------------------------------------------log-odds matrix: alength= 4 w= 21 n= 5460 bayes= 10.276 E= 8.3e+001 -923 224 -7 -923 136 -923 -7 -923 62 92 -7 -923 -923 -7 224 -923 -96 92 151 -923 -96 151 92 -923 -96 192 -7 -923 4 92 -7 -96 -923 224 -7 -923 104 -7 -923 -96 -923 -923 -923 162 -923 224 -923 -96 104 -923 92 -923 -923 224 -7 -923 -923 151 -7 4 136 -7 -923 -923 -923 251 -923 -923 -923 -7 -923 136 -923 92 151 -96 -923 -7 -7 104 -923 224 -7 -923 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 4 w= 21 nsites= 6 E= 8.3e+001 0.000000 0.833333 0.166667 0.000000 0.833333 0.000000 0.166667 0.000000 0.500000 0.333333 0.166667 0.000000 0.000000 0.166667 0.833333 0.000000 0.166667 0.333333 0.500000 0.000000 0.166667 0.500000 0.333333 0.000000 0.166667 0.666667 0.166667 0.000000 0.333333 0.333333 0.166667 0.166667 0.000000 0.833333 0.166667 0.000000 0.666667 0.166667 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.000000 0.166667 0.666667 0.000000 0.333333 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.500000 0.166667 0.333333 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.333333 0.500000 0.166667 0.000000 0.166667 0.166667 0.666667 0.000000 0.833333 0.166667 0.000000 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 regular expression--------------------------------------------------------------------------------CA[AC]G[GC][CG]C[AC]CATC[AG]C[CT]ACT[GC]TC--------------------------------------------------------------------------------Time 14.28 secs.****************************************************************************************************************************************************************SUMMARY OF MOTIFS********************************************************************************-------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001--------------------------------------------------------------------------------SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM------------- ---------------- -------------CHO1 3.59e-08 614_[+2(1.78e-08)]_[+1(3.90e-08)]_149CHO2 7.15e-05 349_[+1(4.67e-09)]_435FAS1 2.77e-08 44_[+2(2.39e-08)]_25_[+1(2.21e-08)]_17_[-2(5.62e-05)]_656FAS2 2.35e-10 562_[+1(1.49e-07)]_131_[+2(2.43e-11)]_70ACC1 2.48e-09 34_[+2(3.11e-05)]_[+2(6.89e-05)]_2_[+1(9.66e-09)]_40_[+2(4.36e-09)]_645INO1 7.88e-12 239_[-2(7.95e-05)]_108_[-2(4.85e-10)]_181_[-1(6.39e-05)]_33_[-1(2.22e-10)]_165OPI3 5.07e-09 503_[-2(8.26e-10)]_60_[-1(1.08e-07)]_32_[+1(7.38e-05)]_152--------------------------------------------------------------------------------****************************************************************************************************************************************************************Stopped because nmotifs = 2 reached.********************************************************************************CPU: chromo.imb.uq.edu.au********************************************************************************⌨️ 快捷键说明
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