meme.adh.oops

来自「EM算法的改进」· OOPS 代码 · 共 641 行 · 第 1/4 页

OOPS
641 行
字号
1234
BPHB_PSEPS                  153  1.80e-12 GFYPNGGGPL YTAAKQAIVGLVRELAFELAPYVRVNGVG PGGMNSDMRGCSGA_MYXXA                   88  2.10e-12 AANTDGGAYA YRMSKAALNMAVRSMSTDLRPEGFVTVLL HPGWVQTDMGFABI_ECOLI                  159  4.15e-12 AERAIPNYNV MGLAKASLEANVRYMANAMGPEGVRVNAI SAGPIRTLAAADH_DROME                   152  5.20e-12 GFNAIYQVPV YSGTKAAVVNFTSSLAKLAPITGVTAYTV NPGITRTTLVDHCA_HUMAN                  193  4.80e-10 HQKEGWPSSA YGVTKIGVTVLSRIHARKLSEQRKGDKIL LNACCPGWVRPCR_PEA                      26  2.77e-08 PKEGKIGASL KDSTLFGVSSLSDSLKGDFTSSALRCKEL RQKVGAVRAEMAS1_AGRRA                  349  5.72e-08 VDYQRFHLQW YINCVAPLRMTELCLPHLYETGSGRIVNI NSMSGQRVLN----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 1 block diagrams--------------------------------------------------------------------------------SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM-------------            ----------------  -------------YRTP_BACSU                        1.6e-22  154_[1]_55AP27_MOUSE                        6.3e-22  148_[1]_67NODG_RHIME                        1.1e-21  151_[1]_65BUDC_KLETE                          4e-21  151_[1]_61FIXR_BRAJA                        6.1e-21  188_[1]_61DHGB_BACME                        7.5e-20  159_[1]_74HMTR_LEIMA                        3.4e-19  192_[1]_66YURA_MYXXA                        4.8e-19  159_[1]_70GUTD_ECOLI                        4.8e-19  153_[1]_772BHD_STREX                        1.1e-18  151_[1]_75HDHA_ECOLI                        1.2e-18  158_[1]_68DHB2_HUMAN                        2.2e-18  231_[1]_127DHMA_FLAS1                        5.5e-18  164_[1]_77HDE_CANTR                         9.7e-18  466_[1]_411FVT1_HUMAN                        2.9e-17  185_[1]_118BDH_HUMAN                         8.2e-17  207_[1]_107RIDH_KLEAE                        9.1e-17  159_[1]_61DHES_HUMAN                        1.4e-16  154_[1]_144BA72_EUBSP                        2.5e-16  156_[1]_64LIGD_PSEPA                        1.2e-15  156_[1]_120DHII_HUMAN                        1.6e-15  182_[1]_81ENTA_ECOLI                        1.8e-15  143_[1]_763BHD_COMTE                        7.8e-15  150_[1]_74DHB3_HUMAN                        8.6e-15  197_[1]_84RFBB_NEIGO                        1.5e-14  164_[1]_153YINL_LISMO                        3.2e-14  153_[1]_66BPHB_PSEPS                        1.8e-12  152_[1]_94CSGA_MYXXA                        2.1e-12  87_[1]_50FABI_ECOLI                        4.2e-12  158_[1]_75ADH_DROME                         5.2e-12  151_[1]_75DHCA_HUMAN                        4.8e-10  192_[1]_55PCR_PEA                           2.8e-08  25_[1]_345MAS1_AGRRA                        5.7e-08  348_[1]_99----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 1 in BLOCKS format--------------------------------------------------------------------------------BL   MOTIF 1 width=29 seqs=33YRTP_BACSU               (  155) YSASKFAVLGLTESLMQEVRKHNIRVSAL  1 AP27_MOUSE               (  149) YSSTKGAMTMLTKAMAMELGPHKIRVNSV  1 NODG_RHIME               (  152) YCASKAGMIGFSKSLAQEIATRNITVNCV  1 BUDC_KLETE               (  152) YSSSKFAVRGLTQTAARDLAPLGITVNGF  1 FIXR_BRAJA               (  189) YATSKAALASLTRELAHDYAPHGIRVNAI  1 DHGB_BACME               (  160) YAASKGGMKLMTETLALEYAPKGIRVNNI  1 HMTR_LEIMA               (  193) YTMAKGALEGLTRSAALELAPLQIRVNGV  1 YURA_MYXXA               (  160) YSASKAFLSTFMESLRVDLRGTGVRVTCI  1 GUTD_ECOLI               (  154) YSAAKFGGVGLTQSLALDLAEYGITVHSL  1 2BHD_STREX               (  152) YGASKWGVRGLSKLAAVELGTDRIRVNSV  1 HDHA_ECOLI               (  159) YASSKAAASHLVRNMAFDLGEKNIRVNGI  1 DHB2_HUMAN               (  232) YGSSKAAVTMFSSVMRLELSKWGIKVASI  1 DHMA_FLAS1               (  165) YVAAKGGVAMLTRAMAVDLARHGILVNMI  1 HDE_CANTR                (  467) YSSSKAGILGLSKTMAIEGAKNNIKVNIV  1 FVT1_HUMAN               (  186) YSASKFAIRGLAEALQMEVKPYNVYITVA  1 BDH_HUMAN                (  208) YCITKFGVEAFSDCLRYEMYPLGVKVSVV  1 RIDH_KLEAE               (  160) YTASKFAVQAFVHTTRRQVAQYGVRVGAV  1 DHES_HUMAN               (  155) YCASKFALEGLCESLAVLLLPFGVHLSLI  1 BA72_EUBSP               (  157) YPASKASVIGLTHGLGREIIRKNIRVVGV  1 LIGD_PSEPA               (  157) YSAAKAASINLMEGYRQGLEKYGIGVSVC  1 DHII_HUMAN               (  183) YSASKFALDGFFSSIRKEYSVSRVNVSIT  1 ENTA_ECOLI               (  144) YGASKAALKSLALSVGLELAGSGVRCNVV  1 3BHD_COMTE               (  151) YSASKAAVSALTRAAALSCRKQGYAIRVN  1 DHB3_HUMAN               (  198) YSASKAFVCAFSKALQEEYKAKEVIIQVL  1 RFBB_NEIGO               (  165) YSASKAAADHLVRAWQRTYRLPSIVSNCS  1 YINL_LISMO               (  154) YGATKWAVRDLMEVLRMESAQEGTNIRTA  1 BPHB_PSEPS               (  153) YTAAKQAIVGLVRELAFELAPYVRVNGVG  1 CSGA_MYXXA               (   88) YRMSKAALNMAVRSMSTDLRPEGFVTVLL  1 FABI_ECOLI               (  159) MGLAKASLEANVRYMANAMGPEGVRVNAI  1 ADH_DROME                (  152) YSGTKAAVVNFTSSLAKLAPITGVTAYTV  1 DHCA_HUMAN               (  193) YGVTKIGVTVLSRIHARKLSEQRKGDKIL  1 PCR_PEA                  (   26) KDSTLFGVSSLSDSLKGDFTSSALRCKEL  1 MAS1_AGRRA               (  349) YINCVAPLRMTELCLPHLYETGSGRIVNI  1 //----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 1 position-specific scoring matrix--------------------------------------------------------------------------------log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.09755 E= 3.6e-165   -716   -497   -698   -691   -172   -730   -304   -562    -80   -507     12   -550   -661   -513   -563   -605   -625   -609   -217    508    -51    240    -90   -249   -334     53   -232   -106   -219   -337   -278   -209    -72   -192    -79    276     81   -153   -332   -306    257    -64   -390   -343   -320   -160   -326   -144   -343   -193     26   -120   -436   -313   -349     86   -117   -123   -309   -358     57    116   -511   -541   -504   -420   -453   -532   -481   -549   -470   -353   -434   -438   -470    325    161   -493   -485   -492   -433   -317   -482   -429   -524   -520   -342   -409    413   -326   -416   -349   -435   -343    -57   -433   -392   -321   -375   -453    205   -259   -559   -505    282     34   -356    -70   -475   -333   -299   -445   -475     -1   -468   -326   -334   -312    255   -226    235   -273   -630   -622     68    154   -557   -603   -636   -616   -544   -517    -44   -518   -595      5   -371   -482   -571   -615    -80   -195   -498   -421   -234   -161   -307     78   -389    146    165   -378   -410   -325   -384    -96   -250    223   -275   -265    -75    107     27    110   -355   -358   -150     45     46    -69   -279    -14   -296     44    145     85     61     -5   -331   -279     33   -283    -54   -168   -321    176    159   -291   -150   -137    223     56   -315   -120   -208     49    -61   -125   -319   -277   -215   -277   -532   -447    217   -558   -360   -167   -423    288     23    -95   -427   -325   -396   -413   -122   -250   -311   -327    -89    117   -466   -101    -26   -476   -318   -198   -376   -255    156   -325   -415   -315   -380    173    259     99   -304   -300   -295   -344     26    181   -386   -383    160   -385    151    -69   -304   -196   -322    112    242     49   -236   -378   -354   -305     56    211   -348      6   -258    -72   -244    -52   -256   -112   -197    -40   -364   -217   -294    224    101    -30   -286     10     -3   -202   -498   -419   -224   -471     54    -37   -388    234    272   -382   -407   -317   -379   -325    -74    -85    143      8    204   -306   -264   -189   -396    -69   -189   -390    -14   -378      3   -217    -51    156    193    -72   -251   -369   -361   -322   -277   -280   -236    -39     57   -152    158    -80     39     79    153    -21   -313    156    145   -204    -60     39   -315      8   -164   -464    216    305   -496   -158   -268   -472    -47    -16   -396   -277   -379     31   -306    -90    -81   -452   -469   -411   -157    123   -496   -418    -13   -163   -303     31   -385    220    113   -376   -406   -318   -379    -98   -251     25   -270    253    149   -311   -209     33   -354     22   -151    -97     45   -149   -278   -172    -46    -92    145     50    -59   -348   -330      5   -142   -318   -208     76   -356    -68   -151    -97    147   -150   -280   -172    276    112     34    -61     60   -140   -332   -280   -268   -317    -47     77    -38   -150    250   -359    121    -18   -279    -15    -46    112    -37     50     13   -352    139    222   -156   -338   -229    -48   -391    239   -183   -396    -30   -386   -318    190   -329     27     74     -6   -247   -151   -356   -313   -372   -253   -410   -399   -123   -293   -366    345   -197    -52   -102   -354   -429   -337   -203   -342   -171    118   -313   -110   -144   -290   -233   -162   -327    -68     73    -84     85   -139   -256     56   -312   -113    285   -203     97      1   -321      8   -146     94   -193   -329   -285   -443   -265     73   -337   -177   -228   -168   -320   -310   -312   -198   -113    308   -344   -389   -142   -319   -207   -138   -356    -68     75   -360     46   -347   -280    302   -296     44     34    113     13     -5   -332      6      6    273   -480    -92   -230     26   -297     77   -371    -32     33     44   -403   -310   -372     80     13    130   -270   -259    -80    123   -491   -416    -13   -162   -302    217   -383     93   -169    -51   -405   -320   -379    -96    -66    178   -270   -260 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 1 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 20 w= 29 nsites= 33 E= 3.6e-165  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.939394  0.090909  0.090909  0.030303  0.000000  0.000000  0.181818  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.393939  0.090909  0.030303  0.000000  0.000000  0.575758  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.000000  0.030303  0.060606  0.030303  0.000000  0.000000  0.000000  0.181818  0.030303  0.030303  0.000000  0.000000  0.181818  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.606061  0.181818  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.939394  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.484848  0.000000  0.000000  0.000000  0.272727  0.121212  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.575758  0.000000  0.000000  0.000000  0.060606  0.272727  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.060606  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.090909  0.000000  0.272727  0.090909  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.424242  0.000000  0.000000  0.060606  0.030303  0.060606  0.121212  0.000000  0.000000  0.000000  0.090909  0.060606  0.060606  0.000000  0.030303  0.000000  0.030303  0.151515  0.121212  0.090909  0.090909  0.000000  0.000000  0.151515  0.000000  0.030303  0.000000  0.000000  0.363636  0.060606  0.000000  0.000000  0.030303  0.151515  0.060606  0.000000  0.000000  0.000000  0.090909  0.030303  0.030303  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.242424  0.000000  0.000000  0.000000  0.000000  0.636364  0.030303  0.030303  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.060606  0.030303  0.000000  0.030303  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.090909  0.000000  0.000000  0.000000  0.000000  0.242424  0.333333  0.181818  0.000000  0.000000  0.000000  0.000000  0.060606  0.212121  0.000000  0.000000  0.060606  0.000000  0.151515  0.060606  0.000000  0.000000  0.000000  0.060606  0.303030  0.090909  0.000000  0.000000  0.000000  0.000000  0.181818  0.060606  0.000000  0.060606  0.000000  0.060606  0.000000  0.030303  0.000000  0.030303  0.000000  0.030303  0.000000  0.000000  0.000000  0.333333  0.121212  0.060606  0.000000  0.030303  0.121212  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.030303  0.000000  0.484848  0.212121  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.030303  0.030303  0.030303  0.515152  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.000000  0.030303  0.000000  0.030303  0.000000  0.030303  0.090909  0.212121  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.060606  0.030303  0.060606  0.030303  0.060606  0.181818  0.090909  0.030303  0.000000  0.090909  0.151515  0.000000  0.030303  0.121212  0.000000  0.030303  0.030303  0.000000  0.242424  0.484848  0.000000  0.030303  0.000000  0.000000  0.030303  0.090909  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.030303  0.000000  0.000000  0.000000  0.030303  0.030303  0.000000  0.000000  0.030303  0.030303  0.000000  0.060606  0.000000  0.454545  0.060606  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.090909  0.000000  0.181818  0.363636  0.000000  0.000000  0.060606  0.000000  0.121212  0.000000  0.030303  0.060606  0.030303  0.000000  0.000000  0.030303  0.000000  0.151515  0.090909  0.030303  0.000000  0.000000  0.030303  0.030303  0.000000  0.000000  0.090909  0.000000  0.060606  0.000000  0.030303  0.151515  0.030303  0.000000  0.000000  0.333333  0.060606  0.060606  0.030303  0.090909  0.030303  0.000000  0.000000  0.000000  0.000000  0.030303  0.090909  0.030303  0.030303  0.121212  0.000000  0.121212  0.090909  0.000000  0.030303  0.030303  0.060606  0.030303  0.090909  0.060606  0.000000  0.030303  0.151515  0.030303  0.000000  0.000000  0.030303  0.000000  0.515152  0.000000  0.000000  0.030303  0.000000  0.000000  0.181818  0.000000  0.030303  0.090909  0.060606  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.030303  0.000000  0.484848  0.030303  0.030303  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.303030  0.000000  0.030303  0.030303  0.000000  0.000000  0.000000  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----------------------------------------------------------------------------------------------------------------------------------------------------------------
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meme.adh.oops - 源码说明

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