meme.ino_up800.oops

来自「EM算法的改进」· OOPS 代码 · 共 335 行 · 第 1/2 页

OOPS
335 行
字号
12
 0.000000  0.571429  0.428571  0.000000  0.000000  0.857143  0.000000  0.142857  0.285714  0.142857  0.428571  0.142857  0.000000  1.000000  0.000000  0.000000 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 1 regular expression--------------------------------------------------------------------------------TTCACATG[CG]C[GA]C--------------------------------------------------------------------------------Time  4.83 secs.****************************************************************************************************************************************************************MOTIF  2	width =   10   sites =   7   llr = 81   E-value = 1.1e+002********************************************************************************--------------------------------------------------------------------------------	Motif 2 Description--------------------------------------------------------------------------------Simplified        A  ::1:::9:6:pos.-specific     C  :a:::a:911probability       G  3:1aa:1:19matrix            T  7:7::::11:         bits    2.5  * ***                     2.3  * ***                     2.0  * ***   *                 1.8  * *** * *Information      1.5  * *** * *content          1.3  * ***** *(16.7 bits)      1.0 ** ***** *                 0.8 ** ***** *                 0.5 ******** *                 0.3 **********                 0.0 ----------Multilevel           TCTGGCACAGconsensus            G         sequence                                                      ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 sites sorted by position p-value--------------------------------------------------------------------------------Sequence name            Strand  Start   P-value               Site -------------            ------  ----- ---------            ----------OPI3                         -    186  3.24e-07 GAAAACCAGA TCTGGCACAG ACCGTTGTCAACC1                         +    232  3.24e-07 CCAGTCGTAT TCTGGCACAG TATAGCCTAGCHO1                         -    559  3.24e-07 ATATTCAGTG TCTGGCACAG AAGTCTGCACINO1                         -    283  5.29e-06 ACGGTCTACG GCGGGCGCAG TCGCATGTCTFAS1                         +     44  6.25e-06 TACACGAGGT GCAGGCACGG TTCACTACTCFAS2                         -    185  8.48e-06 TTCTTGCTTT TCTGGCACTC TTGACGGCTTCHO2                         -    413  8.48e-06 TTTTGCCGTT TCTGGCATCG CCGTTCATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 block diagrams--------------------------------------------------------------------------------SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM-------------            ----------------  -------------OPI3                              3.2e-07  185_[-2]_605ACC1                              3.2e-07  231_[+2]_559CHO1                              3.2e-07  558_[-2]_232INO1                              5.3e-06  282_[-2]_508FAS1                              6.3e-06  43_[+2]_747FAS2                              8.5e-06  184_[-2]_606CHO2                              8.5e-06  412_[-2]_378----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 in BLOCKS format--------------------------------------------------------------------------------BL   MOTIF 2 width=10 seqs=7OPI3                     (  186) TCTGGCACAG  1 ACC1                     (  232) TCTGGCACAG  1 CHO1                     (  559) TCTGGCACAG  1 INO1                     (  283) GCGGGCGCAG  1 FAS1                     (   44) GCAGGCACGG  1 FAS2                     (  185) TCTGGCACTC  1 CHO2                     (  413) TCTGGCATCG  1 //----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 position-specific scoring matrix--------------------------------------------------------------------------------log-odds matrix: alength= 4 w= 10 n= 5537 bayes= 9.62571 E= 1.1e+002   -945   -945     70    114   -945    251   -945   -945   -118   -945    -30    114   -945   -945    251   -945   -945   -945    251   -945   -945    251   -945   -945    140   -945    -30   -945   -945    229   -945   -118     82    -30    -30   -118   -945    -30    229   -945 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 4 w= 10 nsites= 7 E= 1.1e+002  0.000000  0.000000  0.285714  0.714286  0.000000  1.000000  0.000000  0.000000  0.142857  0.000000  0.142857  0.714286  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.857143  0.000000  0.142857  0.000000  0.000000  0.857143  0.000000  0.142857  0.571429  0.142857  0.142857  0.142857  0.000000  0.142857  0.857143  0.000000 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 regular expression--------------------------------------------------------------------------------[TG]CTGGCACAG--------------------------------------------------------------------------------Time  9.64 secs.****************************************************************************************************************************************************************SUMMARY OF MOTIFS********************************************************************************--------------------------------------------------------------------------------	Combined block diagrams: non-overlapping sites with p-value < 0.0001--------------------------------------------------------------------------------SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM-------------            ----------------  -------------CHO1                             5.44e-06  152_[+2(1.10e-05)]_396_[-2(3.24e-07)]_42_[+1(4.23e-07)]_17_[+1(1.23e-05)]_149CHO2                             6.96e-05  353_[+1(2.52e-07)]_47_[-2(8.48e-06)]_378FAS1                             4.61e-06  43_[+2(6.25e-06)]_41_[+1(1.85e-08)]_694FAS2                             2.34e-04  184_[-2(8.48e-06)]_372_[+1(9.43e-07)]_222ACC1                             2.09e-06  82_[+1(1.52e-07)]_137_[+2(3.24e-07)]_559INO1                             3.95e-06  282_[-2(5.29e-06)]_327_[-1(1.85e-08)]_55_[+1(7.55e-06)]_102OPI3                             3.70e-05  185_[-2(3.24e-07)]_144_[+1(3.32e-06)]_449--------------------------------------------------------------------------------****************************************************************************************************************************************************************Stopped because nmotifs = 2 reached.********************************************************************************CPU: chromo.imb.uq.edu.au********************************************************************************
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meme.ino_up800.oops - 源码说明

本页面展示了「EM算法的改进」中的 meme.ino_up800.oops 源码文件，采用 OOPS 编程语言编写，共 335 行代码。您可以在线阅读完整代码内容，也可以返回资源详情页下载完整源码包进行本地学习和开发。

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