meme.farntrans5.tcm

来自「EM算法的改进」· TCM 代码 · 共 477 行 · 第 1/3 页

TCM
477 行
字号
123
Multilevel           INKEKLLEFILSCQconsensus                    YV    sequence                     WL                                                                          ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 sites sorted by position p-value--------------------------------------------------------------------------------Sequence name             Start   P-value                 Site   -------------             ----- ---------            --------------BET2_YEAST                  254  2.24e-13 SLAIIGRLDW INYEKLTEFILKCQ DEKKGGISDRRATRABGERB                  258  1.30e-12 SLKIIGRLHW IDREKLRSFILACQ DEETGGFADRRATRABGERB                  162  4.20e-12 TLALLGKLDA INVEKAIEFVLSCM NFDGGFGCRPRATRABGERB                   66  9.60e-12 VMDLMGQLHR MNKEEILVFIKSCQ HECGGVSASIRAM1_YEAST                  278  5.08e-11 SLAILRSMDQ INVEKLLEWSSARQ LQEERGFCGRCAL1_YEAST                  190  5.01e-10 CRSKEDFDEY IDTEKLLGYIMSQQ CYNGAFGAHNBET2_YEAST                   55  6.90e-10 ALCVLDSPET FVKEEVISFVLSCW DDKYGAFAPFRATRABGERB                  114  1.57e-09 ILTLYDSIHV INVDKVVAYVQSLQ KEDGSFAGDIPFTB_RAT                    172  2.34e-09 IIGTEEAYNV INREKLLQYLYSLK QPDGSFLMHVRAM1_YEAST                  330  4.59e-09 ILEAFGYGQC FNKHALRDYILYCC QEKEQPGLRDCAL1_YEAST                  126  1.65e-08 LRDYEYFETI LDKRSLARFVSKCQ RPDRGSFVSCPFTB_RAT                    268  1.65e-08 ALVILKKERS LNLKSLLQWVTSRQ MRFEGGFQGRPFTB_RAT                    220  1.65e-08 VASLTNIITP DLFEGTAEWIARCQ NWEGGIGGVPRAM1_YEAST                  229  2.54e-08 IATLLNILTE ELTEGVLNYLKNCQ NYEGGFGSCPPFTB_RAT                    330  4.58e-08 DPALSMSHWM FHQQALQEYILMCC QCPAGGLLDKCAL1_YEAST                  239  5.86e-08 LLSSLEKLSD KFKEDTITWLLHRQ VSSHGCMKFEPFTB_RAT                    121  1.52e-07 LELLDEPIPQ IVATDVCQFLELCQ SPDGGFGGGPCAL1_YEAST                  362  1.91e-07 IEGKFNGELC IPQEIFNDFSKRCC F         BET2_YEAST                  107  4.34e-07 TYDALDVLGK DRKVRLISFIRGNQ LEDGSFQGDRBET2_YEAST                  155  5.01e-07 ALSILGELTS EVVDPAVDFVLKCY NFDGGFGLCPRAM1_YEAST                  180  5.78e-07 CDNIDGCWDR IDRKGIYQWLISLK EPNGGFKTCL----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 block diagrams--------------------------------------------------------------------------------SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM-------------            ----------------  -------------BET2_YEAST                        4.3e-07  54_[2]_38_[2]_34_[2]_85_[2]_58RATRABGERB                        1.6e-09  65_[2]_34_[2]_34_[2]_82_[2]_60RAM1_YEAST                        5.8e-07  179_[2]_35_[2]_35_[2]_38_[2]_88CAL1_YEAST                        5.9e-08  125_[2]_50_[2]_35_[2]_109_[2]_1PFTB_RAT                          2.3e-09  120_[2]_37_[2]_34_[2]_34_[2]_48_                                           [2]_94----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 in BLOCKS format--------------------------------------------------------------------------------BL   MOTIF 2 width=14 seqs=21BET2_YEAST               (  254) INYEKLTEFILKCQ  1 RATRABGERB               (  258) IDREKLRSFILACQ  1 RATRABGERB               (  162) INVEKAIEFVLSCM  1 RATRABGERB               (   66) MNKEEILVFIKSCQ  1 RAM1_YEAST               (  278) INVEKLLEWSSARQ  1 CAL1_YEAST               (  190) IDTEKLLGYIMSQQ  1 BET2_YEAST               (   55) FVKEEVISFVLSCW  1 RATRABGERB               (  114) INVDKVVAYVQSLQ  1 PFTB_RAT                 (  172) INREKLLQYLYSLK  1 RAM1_YEAST               (  330) FNKHALRDYILYCC  1 CAL1_YEAST               (  126) LDKRSLARFVSKCQ  1 PFTB_RAT                 (  268) LNLKSLLQWVTSRQ  1 PFTB_RAT                 (  220) DLFEGTAEWIARCQ  1 RAM1_YEAST               (  229) ELTEGVLNYLKNCQ  1 PFTB_RAT                 (  330) FHQQALQEYILMCC  1 CAL1_YEAST               (  239) KFKEDTITWLLHRQ  1 PFTB_RAT                 (  121) IVATDVCQFLELCQ  1 CAL1_YEAST               (  362) IPQEIFNDFSKRCC  1 BET2_YEAST               (  107) DRKVRLISFIRGNQ  1 BET2_YEAST               (  155) EVVDPAVDFVLKCY  1 RAM1_YEAST               (  180) IDRKGIYQWLISLK  1 //----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 position-specific scoring matrix--------------------------------------------------------------------------------log-odds matrix: alength= 20 w= 14 n= 1835 bayes= 7.42721 E= 3.1e-019   -180   -316     28     36    140   -376   -308    299    -24    -14    117   -265   -348   -268   -271   -280   -167    -65   -321   -275   -149   -393    133   -139    -11   -301     50   -227   -104    -40   -165    317      0   -117     32   -189   -143    106   -363   -290     -9   -383   -234   -146     -8   -309   -205   -210    224   -111   -154   -135   -277    119    160   -196     94    147   -356      0   -174   -491     57    300   -396   -328     51   -351     95   -378   -243   -145   -289     50     33   -217     12    -38   -433   -348     61   -430     48     71   -335     60   -173    -37    243   -328   -192    -95      2    -80     41     27   -130   -250   -375   -291     55   -332   -507   -413     10   -422   -361     96   -365    194    -94   -334   -390   -340   -334   -331     92    167   -344   -304     61     19   -456   -363   -205   -378   -316    176   -315    118    -79     32   -352     14     98   -285     19     91   -309     10     -6   -431     96    174   -336    -74   -174   -302    -67   -329   -193     61   -249    205     41     72     21    -37   -376   -291   -585   -591   -675   -658    339   -654   -303   -494   -585   -478   -424   -461   -604   -498   -508   -576   -538   -496    362    282   -333   -431   -610   -551   -351   -574   -548    290   -506     94   -192   -471   -535   -506   -502      6   -316    227   -516   -458     -7   -410   -200      4   -314   -290   -182    -28    139    137     97   -106   -256     51     38     25     20   -221   -366     -4     61   -428   -188   -102   -334    -74     52   -298    141   -130     93     61   -249    -81    112    195   -129   -248   -374     -5   -318    386   -431   -324   -470   -438   -297   -372    -61     20   -304     47   -439     41    186   -360   -300   -347   -474   -424   -264     97   -402   -180   -325   -446   -118   -335     29   -335     49   -229   -343    411   -155   -328   -274   -317     47    -50 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 20 w= 14 nsites= 21 E= 3.1e-019  0.000000  0.000000  0.095238  0.095238  0.142857  0.000000  0.000000  0.476190  0.047619  0.095238  0.047619  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.190476  0.000000  0.047619  0.000000  0.047619  0.000000  0.000000  0.095238  0.000000  0.380952  0.047619  0.000000  0.047619  0.000000  0.000000  0.142857  0.000000  0.000000  0.047619  0.000000  0.000000  0.000000  0.047619  0.000000  0.000000  0.000000  0.285714  0.047619  0.000000  0.000000  0.000000  0.095238  0.142857  0.000000  0.095238  0.190476  0.000000  0.047619  0.000000  0.000000  0.095238  0.571429  0.000000  0.000000  0.047619  0.000000  0.095238  0.000000  0.000000  0.000000  0.000000  0.047619  0.047619  0.000000  0.047619  0.047619  0.000000  0.000000  0.095238  0.000000  0.095238  0.095238  0.000000  0.142857  0.000000  0.047619  0.333333  0.000000  0.000000  0.000000  0.047619  0.000000  0.047619  0.095238  0.000000  0.000000  0.000000  0.000000  0.095238  0.000000  0.000000  0.000000  0.047619  0.000000  0.000000  0.095238  0.000000  0.476190  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.095238  0.190476  0.000000  0.000000  0.095238  0.047619  0.000000  0.000000  0.000000  0.000000  0.000000  0.190476  0.000000  0.285714  0.000000  0.047619  0.000000  0.047619  0.095238  0.000000  0.047619  0.095238  0.000000  0.047619  0.047619  0.000000  0.142857  0.238095  0.000000  0.047619  0.000000  0.000000  0.000000  0.000000  0.000000  0.047619  0.000000  0.190476  0.047619  0.142857  0.047619  0.047619  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.476190  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.238095  0.285714  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.380952  0.000000  0.238095  0.000000  0.000000  0.000000  0.000000  0.000000  0.095238  0.000000  0.285714  0.000000  0.000000  0.047619  0.000000  0.000000  0.047619  0.000000  0.000000  0.000000  0.047619  0.142857  0.380952  0.047619  0.000000  0.000000  0.047619  0.047619  0.095238  0.047619  0.000000  0.000000  0.047619  0.095238  0.000000  0.000000  0.000000  0.000000  0.047619  0.047619  0.000000  0.142857  0.047619  0.047619  0.047619  0.000000  0.000000  0.095238  0.380952  0.000000  0.000000  0.000000  0.047619  0.000000  0.619048  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.142857  0.000000  0.047619  0.000000  0.047619  0.142857  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.142857  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.095238  0.000000  0.047619  0.000000  0.000000  0.619048  0.000000  0.000000  0.000000  0.000000  0.047619  0.047619 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 regular expression--------------------------------------------------------------------------------INKEKLLE[FYW][IVL]LSCQ--------------------------------------------------------------------------------Time 10.51 secs.****************************************************************************************************************************************************************SUMMARY OF MOTIFS********************************************************************************--------------------------------------------------------------------------------	Combined block diagrams: non-overlapping sites with p-value < 0.0001--------------------------------------------------------------------------------SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM-------------            ----------------  -------------RAM1_YEAST                       2.14e-20  144_[1(1.27e-16)]_5_[2(5.78e-07)]_4_[1(1.33e-13)]_1_[2(2.54e-08)]_4_[1(5.00e-17)]_1_[2(5.08e-11)]_4_[1(3.47e-16)]_4_[2(4.59e-09)]_5_[1(3.52e-13)]_35_[2(9.16e-05)]_4PFTB_RAT                         2.44e-21  120_[2(1.52e-07)]_3_[1(4.30e-19)]_4_[2(2.34e-09)]_3_[1(2.81e-14)]_1_[2(1.65e-08)]_3_[1(1.15e-19)]_1_[2(1.65e-08)]_4_[1(3.17e-16)]_14_[2(4.58e-08)]_4_[1(4.30e-15)]_60BET2_YEAST                       1.02e-27  6_[2(5.17e-05)]_3_[1(3.11e-10)]_1_[2(6.90e-10)]_4_[1(7.78e-14)]_4_[2(4.34e-07)]_3_[1(3.41e-17)]_1_[2(5.01e-07)]_3_[1(2.10e-18)]_21_[1(7.28e-22)]_1_[2(2.24e-13)]_4_[1(6.64e-17)]_24RATRABGERB                       4.90e-26  65_[2(9.60e-12)]_3_[1(2.40e-14)]_1_[2(1.57e-09)]_3_[1(8.19e-19)]_1_[2(4.20e-12)]_3_[1(7.36e-19)]_18_[1(6.18e-21)]_1_[2(1.30e-12)]_4_[1(1.43e-17)]_26CAL1_YEAST                       3.16e-22  125_[2(1.65e-08)]_50_[2(5.01e-10)]_1_[1(1.14e-13)]_4_[2(5.86e-08)]_22_[1(9.17e-20)]_22_[1(5.47e-13)]_5_[2(1.91e-07)]_1--------------------------------------------------------------------------------****************************************************************************************************************************************************************Stopped because nmotifs = 2 reached.********************************************************************************CPU: chromo.imb.uq.edu.au********************************************************************************
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meme.farntrans5.tcm - 源码说明

本页面展示了「EM算法的改进」中的 meme.farntrans5.tcm 源码文件，采用 TCM 编程语言编写，共 477 行代码。您可以在线阅读完整代码内容，也可以返回资源详情页下载完整源码包进行本地学习和开发。

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