📄 meme.crp0.zoops
字号:
-87 -82 99 13 -1081 -182 -1081 163 -145 218 -1081 -1081 135 -1081 -82 -145 -1081 227 -1081 -245 145 -182 -182 -245 -45 135 -1081 -13 13 -82 -1081 87 13 -1081 -182 101 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 4 w= 19 nsites= 18 E= 2.1e-008 0.000000 0.166667 0.055556 0.777778 0.000000 0.111111 0.555556 0.333333 0.000000 0.166667 0.000000 0.833333 0.222222 0.000000 0.777778 0.000000 0.722222 0.166667 0.000000 0.111111 0.222222 0.111111 0.277778 0.388889 0.111111 0.555556 0.222222 0.111111 0.277778 0.166667 0.333333 0.222222 0.611111 0.000000 0.222222 0.166667 0.055556 0.277778 0.388889 0.277778 0.166667 0.111111 0.388889 0.333333 0.000000 0.055556 0.000000 0.944444 0.111111 0.888889 0.000000 0.000000 0.777778 0.000000 0.111111 0.111111 0.000000 0.944444 0.000000 0.055556 0.833333 0.055556 0.055556 0.055556 0.222222 0.500000 0.000000 0.277778 0.333333 0.111111 0.000000 0.555556 0.333333 0.000000 0.055556 0.611111 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 regular expression--------------------------------------------------------------------------------T[GT]T[GA]A[TGA][CG][GAT][AG][GCT][GT]TCACA[CTA][TA][TA]--------------------------------------------------------------------------------Time 2.58 secs.****************************************************************************************************************************************************************MOTIF 2 width = 8 sites = 2 llr = 24 E-value = 1.5e+004********************************************************************************-------------------------------------------------------------------------------- Motif 2 Description--------------------------------------------------------------------------------Simplified A ::::::::pos.-specific C a::5::::probability G :aa:aaaamatrix T :::5:::: bits 2.4 *** **** 2.1 *** **** 1.9 *** **** 1.6 *** ****Information 1.4 *** ****content 1.2 *** ****(17.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 --------Multilevel CGGCGGGGconsensus T sequence ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value--------------------------------------------------------------------------------Sequence name Strand Start P-value Site------------- ------ ----- --------- --------ilv + 5 2.17e-06 GCTC CGGCGGGG TTTTTTGTTAmale + 41 5.53e-06 CACAAAGCGA CGGTGGGG CGTAGGGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 block diagrams--------------------------------------------------------------------------------SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM------------- ---------------- -------------ilv 2.2e-06 4_[+2]_93male 5.5e-06 40_[+2]_57---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 in BLOCKS format--------------------------------------------------------------------------------BL MOTIF 2 width=8 seqs=2ilv ( 5) CGGCGGGG 1 male ( 41) CGGTGGGG 1 //---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix--------------------------------------------------------------------------------log-odds matrix: alength= 4 w= 8 n= 1764 bayes= 9.783 E= 1.5e+004 -765 235 -765 -765 -765 -765 235 -765 -765 -765 235 -765 -765 135 -765 71 -765 -765 235 -765 -765 -765 235 -765 -765 -765 235 -765 -765 -765 235 -765 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 regular expression--------------------------------------------------------------------------------CGG[CT]GGGG--------------------------------------------------------------------------------Time 4.26 secs.****************************************************************************************************************************************************************SUMMARY OF MOTIFS********************************************************************************-------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001--------------------------------------------------------------------------------SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM------------- ---------------- -------------ce1cg 1.11e-03 16_[-1(7.69e-05)]_28_[+1(1.11e-06)]_23ara 6.18e-05 57_[+1(3.16e-08)]_29bglr1 2.40e-03 78_[+1(1.54e-06)]_8crp 2.56e-03 65_[+1(1.90e-06)]_21cya 4.00e-03 49_[-1(3.13e-06)]_37deop2 2.56e-03 9_[+1(2.84e-06)]_31_[-1(8.56e-06)]_27gale 2.25e-03 44_[+1(1.38e-06)]_42ilv 2.54e-05 4_[+2(2.17e-06)]_29_[+1(2.42e-05)]_45lac 4.62e-03 11_[+1(5.51e-06)]_75male 1.08e-05 16_[+1(3.79e-06)]_5_[+2(5.53e-06)]_57malk 1.02e-02 60_[-1(4.00e-05)]_26malt 1.93e-03 40_[-1(1.38e-06)]_46ompa 6.94e-04 50_[+1(4.43e-07)]_36tnaa 3.11e-03 73_[+1(5.51e-06)]_13uxu1 1.47e-02 19_[+1(2.08e-05)]_67pbr322 2.64e-03 52_[-1(4.58e-06)]_34trn9cat 2.36e-02 83_[-1(2.42e-05)]_3tdc 1.29e-02 78_[+1(1.01e-05)]_8--------------------------------------------------------------------------------****************************************************************************************************************************************************************Stopped because nmotifs = 2 reached.********************************************************************************CPU: chromo.imb.uq.edu.au********************************************************************************⌨️ 快捷键说明
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