📄 meme.adh.tcm
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FABI_ECOLI 8.2e-09 158_[1]_82---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 in BLOCKS format--------------------------------------------------------------------------------BL MOTIF 1 width=22 seqs=31YRTP_BACSU ( 155) YSASKFAVLGLTESLMQEVRKH 1 FVT1_HUMAN ( 186) YSASKFAIRGLAEALQMEVKPY 1 BUDC_KLETE ( 152) YSSSKFAVRGLTQTAARDLAPL 1 AP27_MOUSE ( 149) YSSTKGAMTMLTKAMAMELGPH 1 NODG_RHIME ( 152) YCASKAGMIGFSKSLAQEIATR 1 DHES_HUMAN ( 155) YCASKFALEGLCESLAVLLLPF 1 BPHB_PSEPS ( 153) YTAAKQAIVGLVRELAFELAPY 1 GUTD_ECOLI ( 154) YSAAKFGGVGLTQSLALDLAEY 1 FIXR_BRAJA ( 189) YATSKAALASLTRELAHDYAPH 1 HMTR_LEIMA ( 193) YTMAKGALEGLTRSAALELAPL 1 DHB2_HUMAN ( 232) YGSSKAAVTMFSSVMRLELSKW 1 DHGB_BACME ( 160) YAASKGGMKLMTETLALEYAPK 1 3BHD_COMTE ( 151) YSASKAAVSALTRAAALSCRKQ 1 YURA_MYXXA ( 160) YSASKAFLSTFMESLRVDLRGT 1 DHB3_HUMAN ( 198) YSASKAFVCAFSKALQEEYKAK 1 YINL_LISMO ( 154) YGATKWAVRDLMEVLRMESAQE 1 RIDH_KLEAE ( 160) YTASKFAVQAFVHTTRRQVAQY 1 HDE_CANTR ( 467) YSSSKAGILGLSKTMAIEGAKN 1 DHMA_FLAS1 ( 165) YVAAKGGVAMLTRAMAVDLARH 1 DHII_HUMAN ( 183) YSASKFALDGFFSSIRKEYSVS 1 2BHD_STREX ( 152) YGASKWGVRGLSKLAAVELGTD 1 HDHA_ECOLI ( 159) YASSKAAASHLVRNMAFDLGEK 1 HDE_CANTR ( 163) YASAKSALLGFAETLAKEGAKY 1 BDH_HUMAN ( 208) YCITKFGVEAFSDCLRYEMYPL 1 RFBB_NEIGO ( 165) YSASKAAADHLVRAWQRTYRLP 1 BA72_EUBSP ( 157) YPASKASVIGLTHGLGREIIRK 1 CSGA_MYXXA ( 88) YRMSKAALNMAVRSMSTDLRPE 1 LIGD_PSEPA ( 157) YSAAKAASINLMEGYRQGLEKY 1 ENTA_ECOLI ( 144) YGASKAALKSLALSVGLELAGS 1 ADH_DROME ( 152) YSGTKAAVVNFTSSLAKLAPIT 1 FABI_ECOLI ( 159) MGLAKASLEANVRYMANAMGPE 1 //---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix--------------------------------------------------------------------------------log-odds matrix: alength= 20 w= 22 n= 9303 bayes= 9.52617 E= 2.3e-120 -740 -513 -718 -730 -196 -736 -330 -572 -675 -514 22 -580 -670 -551 -624 -632 -650 -625 -240 512 23 286 -533 -522 -522 73 -464 -525 -493 -546 -477 -406 -40 -432 -70 274 81 -137 -509 -518 261 -61 -387 -340 -317 -156 -323 -139 -341 -189 31 -345 -432 -310 -346 91 -112 -193 -306 -355 100 -268 -596 -609 -576 -417 -529 -598 -589 -612 -535 -455 -469 -496 -558 330 118 -500 -553 -581 -585 -458 -610 -578 -652 -635 -481 -570 423 -633 -573 -499 -561 -490 -217 -577 -542 -661 -508 -587 211 -264 -574 -564 275 48 -485 -517 -562 -540 -482 -474 -480 8 -547 -70 -357 -444 265 -445 252 -242 -594 -576 73 124 -522 -551 -586 -565 -496 -494 -481 -488 -557 12 -351 -433 -528 -572 -72 -187 -491 -414 -225 -153 -298 86 -381 155 173 -370 -402 -316 -376 -87 -243 209 -266 -256 -68 114 34 117 -347 -351 -143 53 53 -11 -271 -7 -288 51 124 58 20 2 -324 -271 39 -316 -41 -167 -362 201 166 -353 -152 -143 199 68 -319 -122 -213 9 -59 -354 -345 -296 -190 -361 -648 -565 278 -660 -455 -216 -540 276 38 -56 -532 -427 -509 -525 -442 -320 -364 -377 -30 125 -474 -436 -20 -468 -326 -205 -387 -264 163 -327 -416 -323 -388 144 267 106 -310 -309 -292 -340 -44 207 -382 -379 168 -381 159 -145 -300 -192 -318 119 236 56 -232 -374 -350 -301 58 115 -262 20 -297 -69 -192 -257 -176 -130 -233 -24 -321 -145 -228 227 136 -43 -304 9 6 -200 -497 -418 -219 -470 -306 -31 -386 233 281 -380 -405 -315 -378 -324 -67 -79 151 16 227 -245 -437 -372 -484 -53 -344 -469 -260 -472 12 -365 -446 158 203 -69 -324 -394 -451 -457 -274 -257 -247 -39 66 -376 78 -65 88 89 162 -17 -316 162 123 -208 -53 50 -300 17 -164 -570 209 326 -592 -152 -333 -530 -269 -63 -459 -327 -412 34 -381 -92 -80 -499 -562 -496 -147 132 -489 -410 -220 -63 -295 39 -377 216 121 -367 -399 -311 -372 -88 -241 34 -262 237 171 -280 -208 -26 -344 27 -150 -90 49 -143 -270 -171 -42 -92 150 11 -204 -329 -322 10 -136 -311 -205 39 -350 -62 -147 -90 176 -143 -275 -168 285 118 40 -182 19 -133 -327 -276 -261 -300 -42 81 -19 -352 256 -346 125 -12 -269 -10 -41 48 -32 11 18 -341 146 261 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 20 w= 22 nsites= 31 E= 2.3e-120 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.967742 0.129032 0.096774 0.000000 0.000000 0.000000 0.161290 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.419355 0.096774 0.032258 0.000000 0.000000 0.612903 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.032258 0.064516 0.000000 0.000000 0.000000 0.000000 0.193548 0.032258 0.000000 0.000000 0.000000 0.225806 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.645161 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.483871 0.000000 0.000000 0.000000 0.258065 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.064516 0.000000 0.645161 0.000000 0.000000 0.000000 0.064516 0.225806 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.096774 0.000000 0.290323 0.096774 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.387097 0.000000 0.000000 0.064516 0.032258 0.064516 0.129032 0.000000 0.000000 0.000000 0.096774 0.064516 0.096774 0.000000 0.032258 0.000000 0.032258 0.129032 0.096774 0.064516 0.096774 0.000000 0.000000 0.161290 0.000000 0.032258 0.000000 0.000000 0.419355 0.064516 0.000000 0.000000 0.032258 0.129032 0.064516 0.000000 0.000000 0.000000 0.064516 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.290323 0.000000 0.000000 0.000000 0.000000 0.612903 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.000000 0.000000 0.193548 0.354839 0.193548 0.000000 0.000000 0.000000 0.000000 0.032258 0.258065 0.000000 0.000000 0.064516 0.000000 0.161290 0.032258 0.000000 0.000000 0.000000 0.064516 0.290323 0.096774 0.000000 0.000000 0.000000 0.000000 0.193548 0.032258 0.000000 0.064516 0.000000 0.064516 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.322581 0.161290 0.064516 0.000000 0.032258 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.483871 0.225806 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.032258 0.032258 0.032258 0.548387 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.096774 0.225806 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.064516 0.000000 0.032258 0.032258 0.096774 0.193548 0.096774 0.032258 0.000000 0.096774 0.129032 0.000000 0.032258 0.129032 0.000000 0.032258 0.032258 0.000000 0.225806 0.548387 0.000000 0.032258 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.064516 0.000000 0.064516 0.000000 0.451613 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.096774 0.000000 0.161290 0.419355 0.000000 0.000000 0.032258 0.000000 0.129032 0.000000 0.032258 0.064516 0.032258 0.000000 0.000000 0.032258 0.000000 0.161290 0.064516 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.000000 0.064516 0.000000 0.064516 0.000000 0.032258 0.193548 0.032258 0.000000 0.000000 0.354839 0.064516 0.064516 0.000000 0.064516 0.032258 0.000000 0.000000 0.000000 0.000000 0.032258 0.096774 0.032258 0.000000 0.129032 0.000000 0.129032 0.096774 0.000000 0.032258 0.032258 0.032258 0.032258 0.064516 0.064516 0.000000 0.032258 0.193548 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 regular expression--------------------------------------------------------------------------------YSA[SA]K[AF][AG][VL]xG[LF]T[RE]S[LM][AR]x[ED]LAPx--------------------------------------------------------------------------------Time 39.82 secs.****************************************************************************************************************************************************************MOTIF 2 width = 25 sites = 31 llr = 995 E-value = 1.3e-139********************************************************************************-------------------------------------------------------------------------------- Motif 2 Description--------------------------------------------------------------------------------Simplified A 1::14::::531:::1516:2:422pos.-specific C :::::::::1::::::::1::::::probability D 11::::::::1:::::1:::1:::1matrix E 1:::::::::::::::2::11::22 F :::::::::::::::1:::::3::: G 14::::::a4329:a:::::1::1: H :::::::::::::::1::::1:1:: I ::::135::::::6:::2:1::1:: K 1161:::::::2:::3:::3:::31 L :::::5:::::::3:2:2:2161:1 M 1::::::::::::::::1::::::: N :1:1::::::1:::::::::::::1 P ::1:::::::::::::::::::::: Q 211::::::::1:::::::::::11 R :::::::::::2:::2:::21::11 S 11:::::::133::::1:1::::11 T 1::1:::9:::::::::3::1::1: V :::5425::::::1:::12:1:1:: W ::::::::::::::::::::::::: Y :::::::::::::::::1::::::: bits 6.7 6.0 5.4 4.7 Information 4.0 content 3.4 ** * (46.3 bits) 2.7 *** * * * 2.0 * ****** *** * * 1.3 ******************** *** 0.7 ************************* 0.0 -------------------------Multilevel xGKVALVTGAGSGIGKATAKxLAKEconsensus VII GA L I F A sequence S ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value--------------------------------------------------------------------------------Sequence name Start P-value Site ------------- ----- --------- -------------------------BUDC_KLETE 1 8.34e-20 . MQKVALVTGAGQGIGKAIALRLVKD GFAVAIADYNYRTP_BACSU 5 1.54e-19 MQSL QHKTALITGGGRGIGRATALALAKE GVNIGLIGRTYINL_LISMO 4 1.79e-19 MTI KNKVIIITGASSGIGKATALLLAEK GAKLVLAARRHDE_CANTR 321 3.75e-19 DASGAPTVSL KDKVVLITGAGAGLGKEYAKWFAKY GAKVVVNDFKDHII_HUMAN 33 5.76e-19 ANEEFRPEML QGKKVIVTGASKGIGREMAYHLAKM GAHVVVTARSENTA_ECOLI 4 2.17e-17 MDF SGKNVWVTGAGKGIGYATALAFVEA GAKVTGFDQAHDE_CANTR 7 7.74e-17 MSPVDF KDKVVIITGAGGGLGKYYSLEFAKL GAKVVVNDLGHDHA_ECOLI 10 1.50e-16 MFNSDNLRL DGKCAIITGAGAGIGKEIAITFATA GASVVVSDINDHB3_HUMAN 47 3.54e-16 KVLPKSFLRS MGQWAVITGAGDGIGKAYSFELAKR GLNVVLISRTDHGB_BACME 6 4.36e-16 MYKDL EGKVVVITGSSTGLGKSMAIRFATE KAKVVVNYRS3BHD_COMTE 5 6.59e-16 TNRL QGKVALVTGGASGVGLEVVKLLLGE GAKVAFSDINRIDH_KLEAE 13 1.21e-15 HSVSSMNTSL SGKVAAITGAASGIGLECARTLLGA GAKVVLIDREFIXR_BRAJA 35 1.21e-15 DAVNARVDRG EPKVMLLTGASRGIGHATAKLFSEA GWRIISCARQBA72_EUBSP 5 1.33e-15 MNLV QDKVTIITGGTRGIGFAAAKIFIDN GAKVSIFGETBDH_HUMAN 54 2.64e-15 RTYASAAEPV GSKAVLVTGCDSGFGFSLAKHLHSK GFLVFAGCLMFVT1_HUMAN 31 3.88e-15 PLISPKPLAL PGAHVVVTGGSSGIGKCIAIECYKQ GAFITLVARNPCR_PEA 85 4.26e-15 KSSSEGKKTL RKGNVVITGASSGLGLATAKALAES GKWHVIMACRDHB2_HUMAN 81 4.68e-15 YLSGQELLPV DQKAVLVTGGDCGLGHALCKYLDEL GFTVFAGVLNBPHB_PSEPS 4 4.68e-15 MKL KGEAVLITGGASGLGRALVDRFVAE AKVAVLDKSAAP27_MOUSE 6 6.20e-15 MKLNF SGLRALVTGAGKGIGRDTVKALHAS GAKVVAVTRTDHCA_HUMAN 3 6.80e-15 SS GIHVALVTGGNKGIGLAIVRDLCRL FSGDVVLTARDHMA_FLAS1 13 7.46e-15 AGVSRRPGRL AGKAAIVTGAAGGIGRATVEAYLRE GASVVAMDLADHES_HUMAN 1 2.20e-14 . ARTVVLITGCSSGIGLHLAVRLASD PSQSFKVYATMAS1_AGRRA 244 8.72e-14 GFSHWTVEIH QSPVILVSGSNRGVGKAIAEDLIAH GYRLSLGARKHMTR_LEIMA 5 1.03e-13 MTAP TVPVALVTGAAKRLGRSIAEGLHAE GYAVCLHYHRNODG_RHIME 5 1.55e-13 MFEL TGRKALVTGASGAIGGAIARVLHAQ GAIVGLHGTQ2BHD_STREX 5 2.33e-13 MNDL SGKTVIITGGARGLGAEAARQAVAA GARVVLADVLLIGD_PSEPA 5 4.40e-13 MKDF QDQVAFITGGASGAGFGQAKVFGQA GAKIVVADVRRFBB_NEIGO 5 1.62e-12 MQTE GKKNILVTGGAGFIGSAVVRHIIQN TRDSVVNLDKGUTD_ECOLI 1 1.96e-11 . MNQVAVVIGGGQTLGAFLCHGLAAE GYRVAVVDIQADH_DROME 5 3.35e-11 SFTL TNKNVIFVAGLGGIGLDTSKELLKR DLKNLVILDR---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 block diagrams--------------------------------------------------------------------------------SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM------------- ---------------- -------------BUDC_KLETE 8.3e-20 [2]_216⌨️ 快捷键说明
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