meme.adh.zoops

EM算法的改进

3BHD_COMTE                  151  3.58e-15 SWLPIEQYAG YSASKAAVSALTRAAALSCRKQGYAIR VNSIHPDGIY
LIGD_PSEPA                  157  1.11e-14 GFMGSALAGP YSAAKAASINLMEGYRQGLEKYGIGVS VCTPANIKSN
YINL_LISMO                  154  2.10e-14 GLKAYPGGAV YGATKWAVRDLMEVLRMESAQEGTNIR TATIYPAAIN
DHB3_HUMAN                  198  3.60e-14 ALFPWPLYSM YSASKAFVCAFSKALQEEYKAKEVIIQ VLTPYAVSTA
RFBB_NEIGO                  165  5.61e-14 ETTPYAPSSP YSASKAAADHLVRAWQRTYRLPSIVSN CSNNYGPRQF
ENTA_ECOLI                  144  8.67e-14 AHTPRIGMSA YGASKAALKSLALSVGLELAGSGVRCN VVSPGSTDTD
BPHB_PSEPS                  153  8.96e-13 GFYPNGGGPL YTAAKQAIVGLVRELAFELAPYVRVNG VGPGGMNSDM
CSGA_MYXXA                   88  3.97e-12 AANTDGGAYA YRMSKAALNMAVRSMSTDLRPEGFVTV LLHPGWVQTD
FABI_ECOLI                  159  1.06e-11 AERAIPNYNV MGLAKASLEANVRYMANAMGPEGVRVN AISAGPIRTL
ADH_DROME                   152  1.42e-11 GFNAIYQVPV YSGTKAAVVNFTSSLAKLAPITGVTAY TVNPGITRTT
MAS1_AGRRA                  392  3.27e-10 GQRVLNPLVG YNMTKHALGGLTKTTQHVGWDRRCAAI DICLGFVATD
DHCA_HUMAN                  193  9.23e-10 HQKEGWPSSA YGVTKIGVTVLSRIHARKLSEQRKGDK ILLNACCPGW
PCR_PEA                     144  1.27e-08 AKENYTIMHL DLASLDSVRQFVDNFRRSEMPLDVLIN NAAVYFPTAK
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
YRTP_BACSU                        2.5e-22  154_[1]_57
BUDC_KLETE                        4.8e-22  151_[1]_63
AP27_MOUSE                        5.5e-21  148_[1]_69
NODG_RHIME                          4e-20  151_[1]_67
FIXR_BRAJA                        1.2e-19  188_[1]_63
HMTR_LEIMA                        5.6e-19  192_[1]_68
DHGB_BACME                        9.2e-19  159_[1]_76
GUTD_ECOLI                        2.4e-18  153_[1]_79
HDHA_ECOLI                          8e-18  158_[1]_70
2BHD_STREX                          9e-18  151_[1]_77
HDE_CANTR                         1.6e-17  466_[1]_413
FVT1_HUMAN                        1.8e-17  185_[1]_120
DHB2_HUMAN                        3.1e-17  231_[1]_129
YURA_MYXXA                        4.3e-17  159_[1]_72
DHMA_FLAS1                        4.3e-17  164_[1]_79
RIDH_KLEAE                          6e-17  159_[1]_63
DHES_HUMAN                        7.4e-16  154_[1]_146
BA72_EUBSP                        1.1e-15  156_[1]_66
DHII_HUMAN                        1.2e-15  182_[1]_83
BDH_HUMAN                         1.4e-15  207_[1]_109
3BHD_COMTE                        3.6e-15  150_[1]_76
LIGD_PSEPA                        1.1e-14  156_[1]_122
YINL_LISMO                        2.1e-14  153_[1]_68
DHB3_HUMAN                        3.6e-14  197_[1]_86
RFBB_NEIGO                        5.6e-14  164_[1]_155
ENTA_ECOLI                        8.7e-14  143_[1]_78
BPHB_PSEPS                          9e-13  152_[1]_96
CSGA_MYXXA                          4e-12  87_[1]_52
FABI_ECOLI                        1.1e-11  158_[1]_77
ADH_DROME                         1.4e-11  151_[1]_77
MAS1_AGRRA                        3.3e-10  391_[1]_58
DHCA_HUMAN                        9.2e-10  192_[1]_57
PCR_PEA                           1.3e-08  143_[1]_229
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 1 width=27 seqs=33
YRTP_BACSU               (  155) YSASKFAVLGLTESLMQEVRKHNIRVS  1 
BUDC_KLETE               (  152) YSSSKFAVRGLTQTAARDLAPLGITVN  1 
AP27_MOUSE               (  149) YSSTKGAMTMLTKAMAMELGPHKIRVN  1 
NODG_RHIME               (  152) YCASKAGMIGFSKSLAQEIATRNITVN  1 
FIXR_BRAJA               (  189) YATSKAALASLTRELAHDYAPHGIRVN  1 
HMTR_LEIMA               (  193) YTMAKGALEGLTRSAALELAPLQIRVN  1 
DHGB_BACME               (  160) YAASKGGMKLMTETLALEYAPKGIRVN  1 
GUTD_ECOLI               (  154) YSAAKFGGVGLTQSLALDLAEYGITVH  1 
HDHA_ECOLI               (  159) YASSKAAASHLVRNMAFDLGEKNIRVN  1 
2BHD_STREX               (  152) YGASKWGVRGLSKLAAVELGTDRIRVN  1 
HDE_CANTR                (  467) YSSSKAGILGLSKTMAIEGAKNNIKVN  1 
FVT1_HUMAN               (  186) YSASKFAIRGLAEALQMEVKPYNVYIT  1 
DHB2_HUMAN               (  232) YGSSKAAVTMFSSVMRLELSKWGIKVA  1 
YURA_MYXXA               (  160) YSASKAFLSTFMESLRVDLRGTGVRVT  1 
DHMA_FLAS1               (  165) YVAAKGGVAMLTRAMAVDLARHGILVN  1 
RIDH_KLEAE               (  160) YTASKFAVQAFVHTTRRQVAQYGVRVG  1 
DHES_HUMAN               (  155) YCASKFALEGLCESLAVLLLPFGVHLS  1 
BA72_EUBSP               (  157) YPASKASVIGLTHGLGREIIRKNIRVV  1 
DHII_HUMAN               (  183) YSASKFALDGFFSSIRKEYSVSRVNVS  1 
BDH_HUMAN                (  208) YCITKFGVEAFSDCLRYEMYPLGVKVS  1 
3BHD_COMTE               (  151) YSASKAAVSALTRAAALSCRKQGYAIR  1 
LIGD_PSEPA               (  157) YSAAKAASINLMEGYRQGLEKYGIGVS  1 
YINL_LISMO               (  154) YGATKWAVRDLMEVLRMESAQEGTNIR  1 
DHB3_HUMAN               (  198) YSASKAFVCAFSKALQEEYKAKEVIIQ  1 
RFBB_NEIGO               (  165) YSASKAAADHLVRAWQRTYRLPSIVSN  1 
ENTA_ECOLI               (  144) YGASKAALKSLALSVGLELAGSGVRCN  1 
BPHB_PSEPS               (  153) YTAAKQAIVGLVRELAFELAPYVRVNG  1 
CSGA_MYXXA               (   88) YRMSKAALNMAVRSMSTDLRPEGFVTV  1 
FABI_ECOLI               (  159) MGLAKASLEANVRYMANAMGPEGVRVN  1 
ADH_DROME                (  152) YSGTKAAVVNFTSSLAKLAPITGVTAY  1 
MAS1_AGRRA               (  392) YNMTKHALGGLTKTTQHVGWDRRCAAI  1 
DHCA_HUMAN               (  193) YGVTKIGVTVLSRIHARKLSEQRKGDK  1 
PCR_PEA                  (  144) DLASLDSVRQFVDNFRRSEMPLDVLIN  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 27 n= 9138 bayes= 9.45517 E= 2.8e-167 
  -723   -506    -77   -702   -185   -727   -317   -580   -655   -526     12   -553   -666   -538   -612   -611   -637   -625   -230    508 
   -61    229   -316   -282   -341     41   -253   -328   -244   -178   -291    -51    -83   -220    -93    287     88   -167   -337   -315 
   260    -64   -391   -343   -320   -160   -326   -143   -344   -193     78   -348   -436   -313   -349     67   -117   -123   -309   -358 
    66   -264   -561   -584   -548   -423   -499   -574   -542   -589   -511   -411   -460   -476   -522    329    163   -503   -528   -545 
  -452   -336   -499   -447   -542   -536   -359   -433    415   -291   -437   -367   -452   -360    -77   -451   -411   -530   -392   -470 
   191   -217    -75   -274    251     23     63    -63   -254   -267   -223   -274   -377      9   -297   -244   -248   -242    241   -251 
   243   -268   -626   -616     68    137   -553   -595   -628   -608   -536   -516   -492   -515   -590     56   -369   -474   -564   -607 
   -80   -195   -498   -421   -234   -161   -307     78   -389    146    165   -378   -410   -325   -384    -96   -250    223   -275   -265 
   -75    107     27    110   -355   -150   -150     45     46    -69   -279    -14   -295     44    145     51     61     -5   -331   -279 
    32   -308    -49   -144   -346    186    159   -338   -127   -146    190     58   -300     42   -188      5    -60   -136   -328   -278 
  -201   -362   -641   -557    266   -661   -453   -218   -533    282     30    -68   -526   -420   -501   -524   -444   -321   -367   -382 
   -90    115   -477   -446    -31   -480   -338   -223   -394   -285    153   -325   -425   -330   -396    156    274    117   -327   -328 
  -300   -348     26    182   -390   -387    161   -389    174   -152   -308   -200   -326    112    243     49   -240   -382   -358   -309 
    56    117   -325     10   -265    -71   -230    -55   -234   -115   -203     47   -356   -197   -277    210    129    -32   -290     10 
     3   -195   -497   -418    -13   -464     60    -34   -386    211    277   -376   -407   -319   -380   -318     10    -79    149     14 
   216   -298   -460   -392   -533    -58   -359   -518   -260   -516      8   -381   -459    196    221    -81   -349   -458   -490   -486 
  -283   -261   -259    -47     59   -386    158    -71     34     82    155    -25   -325    154    169   -219    -61     43   -306     10 
  -150   -361    191    296   -397   -153   -187   -395    -27    -70   -315   -205   -323     39   -219      0    -67   -143   -372   -319 
  -156    123   -496    -95   -227    -72   -303     31   -385    219    113   -375   -406   -318   -379    -97   -249     26   -270    228 
   151   -291   -216    -33   -345     21   -157    -94     42   -148      5   -179    -48   -100    143     49   -211   -331    138      5 
  -142   -319    -48     76   -356    -68   -151    -97    147   -150   -281   -172    288    112     34   -186     12   -140   -332   -280 
  -268   -317    -47     77    -38   -357    250   -359    121     20   -279    -14    -46    112     34      5     13   -352    139    222 
  -332   -368    -47    -50   -426    238   -201   -437    -38   -425   -360    201   -356     24    115    -75   -272   -150   -395   -343 
  -357     33   -426   -403    -88   -487   -348    334   -160    -96   -115   -359   -423   -333   -161   -335   -138    143   -302    -68 
   -76   -282   -237   -166   -320    -68     72    -81     84    -61   -250     56   -314   -117    264   -205     98      2   -317      8 
  -116     22   -194   -329   -285   -443   -265     73   -337   -177   -228   -168   -319   -310   -312   -198   -113    308   -344   -389 
  -143   -316   -208   -140   -354    -69     74    -98    -16   -346   -280    315   -297     42     32    111     11    -59   -330      4 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 27 nsites= 33 E= 2.8e-167 
 0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.939394 
 0.090909  0.090909  0.000000  0.000000  0.000000  0.181818  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.030303  0.000000  0.030303  0.393939  0.090909  0.030303  0.000000  0.000000 
 0.606061  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.000000  0.030303  0.090909  0.000000  0.000000  0.000000  0.000000  0.151515  0.030303  0.030303  0.000000  0.000000 
 0.181818  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.636364  0.181818  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.969697  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.454545  0.000000  0.030303  0.000000  0.242424  0.121212  0.030303  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000 
 0.606061  0.000000  0.000000  0.000000  0.060606  0.242424  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.090909  0.000000  0.000000  0.000000  0.000000 
 0.060606  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.090909  0.000000  0.272727  0.090909  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.424242  0.000000  0.000000 
 0.060606  0.030303  0.060606  0.121212  0.000000  0.030303  0.000000  0.090909  0.060606  0.060606  0.000000  0.030303  0.000000  0.030303  0.151515  0.090909  0.090909  0.090909  0.000000  0.000000 
 0.151515  0.000000  0.030303  0.000000  0.000000  0.393939  0.060606  0.000000  0.000000  0.030303  0.121212  0.060606  0.000000  0.030303  0.000000  0.060606  0.030303  0.030303  0.000000  0.000000 
 0.030303  0.000000  0.000000  0.000000  0.272727  0.000000  0.000000  0.000000  0.000000  0.636364  0.030303  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.060606  0.030303  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.090909  0.000000  0.000000  0.000000  0.000000  0.212121  0.363636  0.212121  0.000000  0.000000 
 0.000000  0.000000  0.060606  0.212121  0.000000  0.000000  0.060606  0.000000  0.181818  0.030303  0.000000  0.000000  0.000000  0.060606  0.303030  0.090909  0.000000  0.000000  0.000000  0.000000 
 0.181818  0.030303  0.000000  0.060606  0.000000  0.060606  0.000000  0.030303  0.000000  0.030303  0.000000  0.060606  0.000000  0.000000  0.000000  0.303030  0.151515  0.060606  0.000000  0.030303 
 0.121212  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.030303  0.000000  0.424242  0.212121  0.000000  0.000000  0.000000  0.000000  0.000000  0.060606  0.030303  0.030303  0.030303 
 0.515152  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.121212  0.242424  0.030303  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.030303  0.060606  0.000000  0.060606  0.030303  0.060606  0.181818  0.090909  0.030303  0.000000  0.090909  0.181818  0.000000  0.030303  0.121212  0.000000  0.030303 
 0.030303  0.000000  0.212121  0.484848  0.000000  0.030303  0.000000  0.000000  0.030303  0.060606  0.000000  0.000000  0.000000  0.030303  0.000000  0.060606  0.030303  0.030303  0.000000  0.000000 
 0.030303  0.030303  0.000000  0.030303  0.000000  0.060606  0.000000  0.060606  0.000000  0.454545  0.060606  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.090909  0.000000  0.151515 
 0.363636  0.000000  0.000000  0.030303  0.000000  0.121212  0.000000  0.030303  0.060606  0.030303  0.030303  0.000000  0.030303  0.000000  0.151515  0.090909  0.000000  0.000000  0.030303  0.030303 
 0.030303  0.000000  0.030303  0.090909  0.000000  0.060606  0.000000  0.030303  0.151515  0.030303  0.000000  0.000000  0.363636  0.060606  0.060606  0.000000  0.060606  0.030303  0.000000  0.000000 
 0.000000  0.000000  0.030303  0.090909  0.030303  0.000000  0.121212  0.000000  0.121212  0.121212  0.000000  0.030303  0.030303  0.060606  0.060606  0.060606  0.060606  0.000000  0.030303  0.151515