mast.farntrans5.tcm

EM算法的改进

         5.1e-07          1.4e-18                                            4.6
     KLH INKEKLIQWIKSCQ   GGFQGRPNKEVHTCYTYWALAALAILNKLH                     GGF
     +++ ++++ ++++++++    ++++  ++++++++++++++++++++++++                     +++
151  ELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGL

                                 [2]               [1]
     e-22                        2.0e-13           3.8e-17
     QGRPNKEVHTCYTYWALAALAILNKLH INKEKLIQWIKSCQ    GGFQGRPNKEVHTCYTYWALAALAILNKL
     ++++ ++++++++++++++++++++++ ++ +++++++++++    ++++++++++++++++ ++++++++++ +
226  NGRPSKLPDVCYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLMGYD

     
     
     H
     +
301  NLVPIDPIYCMPKSVTSKFKKYPYK


RATRABGERB
  Rat rab geranylgeranyl transferase beta-subunit
  LENGTH = 331  COMBINED P-VALUE = 2.83e-26  E-VALUE =  1.4e-25
  DIAGRAM: 65_[2]_3_[1]_1_[2]_3_[1]_1_[2]_3_[1]_18_[1]_1_[2]_4_[1]_26

                                                                      [2]
                                                                      1.0e-11
                                                                      INKEKLIQWI
                                                                      +++++++ ++
1    MGTQQKDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFI

            [1]                            [2]              [1]
            1.6e-14                        1.4e-09          5.4e-19
     KSCQ   GGFQGRPNKEVHTCYTYWALAALAILNKLH INKEKLIQWIKSCQ   GGFQGRPNKEVHTCYTYWAL
     ++++   ++ +  +++++++ ++  ++++++++++++ +++++++ ++++++   + ++++++++++++++++++
76   KSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAV

                [2]              [1]
                3.8e-12          4.8e-19
     AALAILNKLH INKEKLIQWIKSCQ   GGFQGRPNKEVHTCYTYWALAALAILNKLH
     ++++++++++ ++++++++++++++   ++++++++ ++++++++++++ ++++++++
151  ATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLP

      [1]                            [2]               [1]
      3.9e-21                        1.2e-12           9.6e-18
      GGFQGRPNKEVHTCYTYWALAALAILNKLH INKEKLIQWIKSCQ    GGFQGRPNKEVHTCYTYWALAALAI
      +++++++++++++++++++++++ ++++++ ++++++++++++++    ++++++++++++ +++ ++++++++
226  SGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSL

     
     
     LNKLH
     +++++
301  LGEEQIKPVSPVFCMPEEVLQRVNVQPELVS


CAL1_YEAST
  RAS PROTEINS GERANYLGERANYLTRANSFERASE (EC 2.5.1.-) (PROTEIN GER
  LENGTH = 376  COMBINED P-VALUE = 1.94e-22  E-VALUE =  9.7e-22
  DIAGRAM: 125_[2]_50_[2]_1_[1]_4_[2]_22_[1]_22_[1]_5_[2]_1


                                                       [2]
                                                       1.8e-08
                                                       INKEKLIQWIKSCQ
                                                        +++++++++++++
76   LDDTENTVISGFVGSLVMNIPHATTINLPNTLFALLSMIMLRDYEYFETILDKRSLARFVSKCQRPDRGSFVSCL

                                            [2]            [1]
                                            4.8e-10        8.7e-14
                                            INKEKLIQWIKSCQ GGFQGRPNKEVHTCYTYWALA
                                            +++++++ ++++++  + + + +++++ +++ ++++
151  DYKTNCGSSVDSDDLRFCYIAVAILYICGCRSKEDFDEYIDTEKLLGYIMSQQCYNGAFGAHNEPHSGYTSCALS

                  [2]                                 [1]
                  5.9e-08                             5.9e-20
     ALAILNKLH    INKEKLIQWIKSCQ                      GGFQGRPNKEVHTCYTYWALAALAIL
     +++++++++      ++++++++++++                      +++++++++ +++++++++++++ ++
226  TLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELNASYDQSDDGGFQGRENKFADTCYAFWCLNSLHLL

                               [1]                                [2]
                               4.0e-13                            2.1e-07
     NKLH                      GGFQGRPNKEVHTCYTYWALAALAILNKLH     INKEKLIQWIKSCQ
     ++++                      ++++ + ++++++++++ + +++++++        + ++ +++++++++
301  TKDWKMLCQTELVTNYLLDRTQKTLTGGFSKNDEEDADLYHSCLGSAALALIEGKFNGELCIPQEIFNDFSKRCC


PFTB_RAT
  PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (EC 2.5.1.-) (CAAX FARNES
  LENGTH = 437  COMBINED P-VALUE = 1.53e-21  E-VALUE =  7.6e-21
  DIAGRAM: 120_[2]_3_[1]_4_[2]_3_[1]_1_[2]_3_[1]_1_[2]_4_[1]_14_[2]_4_[1]_60


                                                  [2]              [1]
                                                  1.3e-07          2.8e-19
                                                  INKEKLIQWIKSCQ   GGFQGRPNKEVHT
                                                  ++ ++++++++ ++   +++++++++ +++
76   EKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHL

                          [2]              [1]                            [2]
                          2.3e-09          2.1e-14                        1.8e-0
     CYTYWALAALAILNKLH    INKEKLIQWIKSCQ   GGFQGRPNKEVHTCYTYWALAALAILNKLH INKEKL
     + +++++++++++++++    ++++++++++ +++   + + ++ +++++++ +++++++++++++++ +  +++
151  APTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGT

                [1]                            [2]               [1]
     8          7.4e-20                        1.8e-08           2.2e-16
     IQWIKSCQ   GGFQGRPNKEVHTCYTYWALAALAILNKLH INKEKLIQWIKSCQ    GGFQGRPNKEVHTCY
     ++++ +++   +++++ +++++++++++++++++ ++++++  + +++++++++++    ++++++ ++++++++
226  AEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCY

                                  [2]               [1]
                                  5.0e-08           3.1e-15
     TYWALAALAILNKLH              INKEKLIQWIKSCQ    GGFQGRPNKEVHTCYTYWALAALAILNK
     ++++++ + ++++                ++++++++++++++    +++ +++++  +++++++++++++++++
301  SFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQH

     
     
     LH
     +
376  FGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHFLQKPVPGFEECEDAVTSDPATD


RAM1_YEAST
  PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (EC 2.5.1.-) (CAAX FARN
  LENGTH = 431  COMBINED P-VALUE = 1.24e-20  E-VALUE =  6.2e-20
  DIAGRAM: 144_[1]_5_[2]_4_[1]_1_[2]_4_[1]_1_[2]_4_[1]_4_[2]_5_[1]_35_[2]_4


                                                                          [1]
                                                                          8.8e-1
                                                                          GGFQGR
                                                                          + ++++
76   PALTKEFHKMYLDVAFEISLPPQMTALDASQPWMLYWIANSLKVMDRDWLSDDTKRKIVVKLFTISPSGGPFGGG

                                  [2]               [1]
     7                            6.4e-07           1.0e-13
     PNKEVHTCYTYWALAALAILNKLH     INKEKLIQWIKSCQ    GGFQGRPNKEVHTCYTYWALAALAILNK
     ++++++++ ++++++++++ ++++     ++++++++++ +++    +  ++ ++++++++ +++++++++++++
151  PGQLSHLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIYCALSIATLLNI

        [2]               [1]                            [2]               [1]
        2.5e-08           3.1e-17                        4.7e-11           2.4e-
     LH INKEKLIQWIKSCQ    GGFQGRPNKEVHTCYTYWALAALAILNKLH INKEKLIQWIKSCQ    GGFQG
     ++ + ++++++++++++    +  ++  +++++++++++++++++++++++ ++++++++++++++     ++ +
226  LTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRSMDQINVEKLLEWSSARQLQEERGFCG

                                  [2]                [1]
     16                           4.9e-09            2.7e-13
     RPNKEVHTCYTYWALAALAILNKLH    INKEKLIQWIKSCQ     GGFQGRPNKEVHTCYTYWALAALAILN
     + ++++++++++++ +++++++++     +++++++++++ ++      +++++++++++++++ +++ ++++++
301  RSNKLVDGCYSFWVGGSAAILEAFGYGQCFNKHALRDYILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAE

                                           [2]
                                           9.8e-05
     KLH                                   INKEKLIQWIKSCQ
     +                                     +++++++ + +++
376  SSYSCTPNDSPHNIKCTPDRLIGSSKLTDVNPVYGLPIENVRKIIHYFKSNLSSPS

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CPU: rocks-155.sdsc.edu
Time 0.011998 secs.

mast meme.farntrans5.tcm