meme.lipocalin.tcm

EM算法的改进

	Motif 2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 2 width=42 seqs=2
ICYA_MANSE               (  102) VPWVLATDYKNYAINYNCDYHPDKKAHSIHAWILSKSKVLEG  1 
BBP_PIEBR                (   98) VFNVLSTDNKNYIIGYYCKYDEDKKGHQDFVWVLSRSKVLTG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 42 n= 698 bayes= 8.44294 E= 9.9e-004 
   -80   -198   -355   -318   -210   -299   -268    106   -341   -110    -68   -323   -234   -238   -198   -230   -101    331   -339   -345 
  -137   -239   -277   -259    326   -239   -146   -121   -264   -107    -85   -234    307   -138   -142   -141   -155   -150    -94    -23 
  -244   -321   -176   -280   -120   -224    -97   -239   -262   -226   -172    227   -263   -132   -127   -167   -185   -265    489   -152 
   -80   -198   -355   -318   -210   -299   -268    106   -341   -110    -68   -323   -234   -238   -198   -230   -101    331   -339   -345 
  -232   -281   -423   -355    -89   -354   -279     14   -351    312     78   -355   -259   -193   -199   -277   -203    -82   -245   -269 
   260   -124   -231   -211   -237    -73   -197   -179   -228   -221   -115   -161   -123   -111   -115    215     18   -110   -289   -286 
  -114   -207   -263   -264   -262   -222   -216   -135   -242   -234   -101   -135   -190   -129   -129     79    379   -137   -308   -321 
  -283   -407    363    -98   -394   -295   -235   -352   -376   -398   -307    -82   -341   -233   -263   -250   -296   -363   -401   -396 
  -148   -254    -80   -171     22   -153     82   -154   -172   -188   -105    285   -177    -52    -64    -70   -103   -190    -73    197 
  -305   -400   -418   -355   -478   -375   -305   -337    336   -408   -296   -309   -331   -224     52   -329   -294   -409   -406   -460 
  -290   -351   -175   -321   -339   -249    -79   -270   -296   -362   -255    396   -272   -163   -203   -117   -181   -335   -332   -353 
  -176   -240   -285   -270    130   -250     13   -148   -272   -146    -89   -219   -212   -153   -133   -163   -183   -182    -24    365 
   186   -147   -282   -245   -131   -169   -213    265   -247    -37      9   -228   -165   -135   -133    -89    -73    105   -241   -226 
  -227   -290   -398   -381   -193   -360   -348    379   -367    -11      7   -338   -320   -272   -264   -272   -181    100   -334   -306 
  -132   -312    -93   -193   -330    316   -121   -289   -215   -339   -227    220   -205   -115   -118    -85   -149   -292   -313   -322 
  -176   -240   -285   -270    130   -250     13   -148   -272   -146    -89   -219   -212   -153   -133   -163   -183   -182    -24    365 
  -148   -254    -80   -171     22   -153     82   -154   -172   -188   -105    285   -177    -52    -64    -70   -103   -190    -73    197 
  -352    503   -549   -513   -466   -488   -464   -376   -574   -454   -338   -497   -461   -440   -393   -414   -349   -450   -559   -571 
  -128   -328    242     -8   -297   -142   -105   -237    165   -262   -158    -41   -149     -4     21    -88   -109   -238   -296   -276 
  -176   -240   -285   -270    130   -250     13   -148   -272   -146    -89   -219   -212   -153   -133   -163   -183   -182    -24    365 
  -183   -327    287    -65   -253   -171    284   -277   -201   -289   -190     -4   -197    -16    -79   -118   -154   -273   -282   -182 
  -101   -319    -72    213   -284   -181   -145   -229   -148   -241   -161   -148    341     12    -70   -102   -119   -214   -319   -301 
  -283   -407    363    -98   -394   -295   -235   -352   -376   -398   -307    -82   -341   -233   -263   -250   -296   -363   -401   -396 
  -305   -400   -418   -355   -478   -375   -305   -337    336   -408   -296   -309   -331   -224     52   -329   -294   -409   -406   -460 
  -305   -400   -418   -355   -478   -375   -305   -337    336   -408   -296   -309   -331   -224     52   -329   -294   -409   -406   -460 
   199   -186   -237   -248   -298    312   -237   -239   -270   -284   -174   -191   -182   -169   -150    -53   -130   -169   -312   -340 
  -252   -300   -224   -252   -170   -257    479   -294   -279   -251   -156    -71   -221     33    -47   -164   -184   -290   -217    -72 
   -58   -241   -120    -57   -236   -135     -5   -183    -92   -192    -82    -52    -91    354     16    179     18   -185   -243   -234 
  -161   -273    270    -82   -206   -214   -176    215   -233   -120    -75    -88   -202   -113   -137   -160   -140     -8   -273   -263 
  -184   -239   -243   -251    281   -254    348   -145   -265   -129    -82   -121   -202    -30    -84   -154   -166   -174    -41    136 
   212   -142   -296   -256   -187   -157   -226     48   -277   -120    -55   -255   -177   -162   -152    -78    -74    246   -277   -283 
  -372   -376   -426   -428   -122   -371   -335   -347   -429   -233   -225   -383   -367   -289   -261   -360   -346   -344    567   -191 
  -159   -241   -393   -369   -194   -350   -324    328   -369    -32     -7   -335   -296   -267   -250   -262   -144    225   -334   -319 
  -232   -281   -423   -355    -89   -354   -279     14   -351    312     78   -355   -259   -193   -199   -277   -203    -82   -245   -269 
   -68   -199   -242   -263   -278   -169   -219   -248   -253   -287   -176   -124   -168   -158   -135    352    119   -255   -326   -308 
  -247   -353   -346   -266   -414   -302   -180   -299    268   -325   -228   -235   -261    -81    333   -237   -222   -341   -332   -379 
   -68   -199   -242   -263   -278   -169   -219   -248   -253   -287   -176   -124   -168   -158   -135    352    119   -255   -326   -308 
  -305   -400   -418   -355   -478   -375   -305   -337    336   -408   -296   -309   -331   -224     52   -329   -294   -409   -406   -460 
   -80   -198   -355   -318   -210   -299   -268    106   -341   -110    -68   -323   -234   -238   -198   -230   -101    331   -339   -345 
  -232   -281   -423   -355    -89   -354   -279     14   -351    312     78   -355   -259   -193   -199   -277   -203    -82   -245   -269 
   -93   -271    -46    252   -263   -166   -113   -175   -114   -220   -118    -96   -123     29    -39    -20    180   -162   -287   -264 
  -157   -352   -261   -320   -404    391   -288   -372   -331   -425   -294   -212   -283   -265   -201   -179   -272   -355   -365   -412 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 42 nsites= 2 E= 9.9e-004 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000 
 0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000 
 0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.500000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 regular expression
--------------------------------------------------------------------------------
V[FP][NW]VL[AS]TD[NY]KNY[AI]I[GN]Y[NY]C[DK]Y[DH][EP]DKK[AG]H[QS][DI][FH][AV]W[IV]LS[KR]SKVL[ET]G
--------------------------------------------------------------------------------




Time  4.34 secs.

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********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
ICYA_MANSE                       3.69e-69  4_[1(1.13e-28)]_69_[2(8.32e-48)]_46
LACB_BOVIN                       5.96e-03  12_[1(4.67e-05)]_138
BBP_PIEBR                        1.26e-71  3_[1(1.01e-31)]_66_[2(3.83e-47)]_34
RETB_BOVIN                       1.82e-18  1_[1(2.52e-21)]_154
MUP2_MOUSE                       5.20e-02  180
--------------------------------------------------------------------------------

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********************************************************************************
Stopped because nmotifs = 2 reached.
********************************************************************************

CPU: chromo.imb.uq.edu.au

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