📄 meme.crp0.oops
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-------------------------------------------------------------------------------- Motif 1 regular expression--------------------------------------------------------------------------------GTGA[TC][CG][TC][ATG][GT][TC]TCACA--------------------------------------------------------------------------------Time 1.19 secs.****************************************************************************************************************************************************************MOTIF 2 width = 15 sites = 18 llr = 129 E-value = 3.0e+011********************************************************************************-------------------------------------------------------------------------------- Motif 2 Description--------------------------------------------------------------------------------Simplified A 91787765:431586pos.-specific C :7112:325313:24probability G 12::12:251421::matrix T :1211211:23541: bits 2.4 2.1 1.9 1.6 Information 1.4 * * content 1.2 * * (10.3 bits) 0.9 ** * * ** 0.7 ***** * * ** 0.5 ******* * *** 0.2 *************** 0.0 ---------------Multilevel ACAAAAAACAGTAAAconsensus CCGCACT Csequence T ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value--------------------------------------------------------------------------------Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------ara + 2 8.65e-08 G ACAAAAACGCGTAAC AAAAGTGTCTompa + 5 3.53e-07 GCTG ACAAAAAAGATTAAA CATACCTTATce1cg - 8 2.64e-06 GCCCGATGCC ACAAAAACCAGCACA AACATTA bglr1 + 1 1.77e-05 . ACAAATCCCAATAAC TTAATTATTGilv - 6 8.09e-05 ATTGCAGATA ACAAAAAACCCCGCC GGAGC cya - 19 8.09e-05 TTGACCGTAA AGAAAGATGCGCTAC ATACAAGTGTgale + 5 8.91e-05 GCGC ATAAAAAACGGCTAA ATTCTTGTGTmalk + 37 9.77e-05 GCTTCTGTGA ACTAAACCGAGGTCA TGTAAGGAATuxu1 + 64 1.29e-04 GACATGTCTT ACCAAAAGGTAGAAC TTATACGCCAtnaa + 41 1.41e-04 TATAATCTTT AAAAAAAGCATTTAA TATTGCTCCCdeop2 - 58 2.01e-04 ACACTTCGAT ACACATCACAATTAA GGAAATCTACmalt - 12 3.52e-04 ATCTTTATTA ACAACTCACCTAAAA CGACGCTGATpbr322 + 83 4.10e-04 ATGCGTAAGG AGAAAATACCGCATC AGGCGCTC tdc - 28 6.32e-04 CGTTATTACA ATTAAATACCTTTAA ATATCAACAAlac - 45 6.77e-04 ACGAGCCGGA AGCATAAAGTGTAAA GCCTGGGGTGtrn9cat + 16 8.27e-04 ACGGAAGATC ACTTCGCAGAATAAA TAAATCCTGGcrp - 41 8.27e-04 TACATGCAGT ACATCAATGTATTAC TGTAGCATCCmale + 56 3.00e-03 GGGCGTAGGG GCAAGGAGGATGGAA AGAGGTTGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 block diagrams--------------------------------------------------------------------------------SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM------------- ---------------- -------------ara 8.6e-08 1_[+2]_89ompa 3.5e-07 4_[+2]_86ce1cg 2.6e-06 7_[-2]_83bglr1 1.8e-05 [+2]_90ilv 8.1e-05 5_[-2]_85cya 8.1e-05 18_[-2]_72gale 8.9e-05 4_[+2]_86malk 9.8e-05 36_[+2]_54uxu1 0.00013 63_[+2]_27tnaa 0.00014 40_[+2]_50deop2 0.0002 57_[-2]_33malt 0.00035 11_[-2]_79pbr322 0.00041 82_[+2]_8tdc 0.00063 27_[-2]_63lac 0.00068 44_[-2]_46trn9cat 0.00083 15_[+2]_75crp 0.00083 40_[-2]_50male 0.003 55_[+2]_35---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 in BLOCKS format--------------------------------------------------------------------------------BL MOTIF 2 width=15 seqs=18ara ( 2) ACAAAAACGCGTAAC 1 ompa ( 5) ACAAAAAAGATTAAA 1 ce1cg ( 8) ACAAAAACCAGCACA 1 bglr1 ( 1) ACAAATCCCAATAAC 1 ilv ( 6) ACAAAAAACCCCGCC 1 cya ( 19) AGAAAGATGCGCTAC 1 gale ( 5) ATAAAAAACGGCTAA 1 malk ( 37) ACTAAACCGAGGTCA 1 uxu1 ( 64) ACCAAAAGGTAGAAC 1 tnaa ( 41) AAAAAAAGCATTTAA 1 deop2 ( 58) ACACATCACAATTAA 1 malt ( 12) ACAACTCACCTAAAA 1 pbr322 ( 83) AGAAAATACCGCATC 1 tdc ( 28) ATTAAATACCTTTAA 1 lac ( 45) AGCATAAAGTGTAAA 1 trn9cat ( 16) ACTTCGCAGAATAAA 1 crp ( 41) ACATCAATGTATTAC 1 male ( 56) GCAAGGAGGATGGAA 1 //---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix--------------------------------------------------------------------------------log-odds matrix: alength= 4 w= 15 n= 1638 bayes= 6.49185 E= 3.0e+011 163 -1081 -182 -1081 -245 177 -23 -145 125 -82 -1081 -87 145 -182 -1081 -145 125 -23 -182 -245 113 -1081 -23 -87 101 50 -1081 -145 72 18 -23 -145 -1081 135 135 -1081 55 77 -182 -87 -13 -182 99 -13 -245 50 -23 72 72 -1081 -82 35 135 -23 -1081 -245 101 99 -1081 -1081 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 4 w= 15 nsites= 18 E= 3.0e+011 0.944444 0.000000 0.055556 0.000000 0.055556 0.666667 0.166667 0.111111 0.722222 0.111111 0.000000 0.166667 0.833333 0.055556 0.000000 0.111111 0.722222 0.166667 0.055556 0.055556 0.666667 0.000000 0.166667 0.166667 0.611111 0.277778 0.000000 0.111111 0.500000 0.222222 0.166667 0.111111 0.000000 0.500000 0.500000 0.000000 0.444444 0.333333 0.055556 0.166667 0.277778 0.055556 0.388889 0.277778 0.055556 0.277778 0.166667 0.500000 0.500000 0.000000 0.111111 0.388889 0.777778 0.166667 0.000000 0.055556 0.611111 0.388889 0.000000 0.000000 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 regular expression--------------------------------------------------------------------------------ACAAAA[AC][AC][CG][AC][GAT][TC][AT]A[AC]--------------------------------------------------------------------------------Time 2.06 secs.****************************************************************************************************************************************************************SUMMARY OF MOTIFS********************************************************************************-------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001--------------------------------------------------------------------------------SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM------------- ---------------- -------------ce1cg 1.45e-05 7_[-2(2.64e-06)]_42_[+1(1.12e-05)]_26ara 1.53e-07 1_[+2(8.65e-08)]_41_[-1(2.72e-06)]_33bglr1 7.12e-05 [+2(1.77e-05)]_63_[-1(9.29e-06)]_12crp 3.08e-03 65_[-1(1.35e-05)]_25cya 1.67e-04 18_[-2(8.09e-05)]_19_[-1(5.16e-06)]_38deop2 7.07e-04 9_[-1(1.02e-05)]_81gale 1.60e-03 4_[+2(8.91e-05)]_35_[+1(5.66e-05)]_36ilv 3.56e-03 5_[-2(8.09e-05)]_85lac 3.65e-04 11_[-1(1.53e-06)]_79male 9.52e-03 16_[-1(1.62e-05)]_74malk 1.99e-04 36_[+2(9.77e-05)]_13_[+1(5.16e-06)]_26malt 1.26e-03 44_[+1(1.12e-05)]_46ompa 5.24e-07 4_[+2(3.53e-07)]_32_[+1(2.44e-06)]_39tnaa 2.08e-04 74_[+1(3.77e-06)]_16uxu1 7.22e-04 20_[+1(1.62e-05)]_70pbr322 7.86e-04 55_[-1(5.73e-06)]_35trn9cat 3.50e-02 105tdc 3.14e-03 81_[+1(1.77e-05)]_9--------------------------------------------------------------------------------****************************************************************************************************************************************************************Stopped because nmotifs = 2 reached.********************************************************************************CPU: localhost.localdomain********************************************************************************⌨️ 快捷键说明
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