meme.crp0.zoops

来自「EM算法的改进」· ZOOPS 代码 · 共 379 行 · 第 1/2 页
ZOOPS
379 行
   -87    -82     99     13  -1081   -182  -1081    163   -145    218  -1081  -1081    135  -1081    -82   -145  -1081    227  -1081   -245    145   -182   -182   -245    -45    135  -1081    -13     13    -82  -1081     87     13  -1081   -182    101 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 1 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 4 w= 19 nsites= 18 E= 2.1e-008  0.000000  0.166667  0.055556  0.777778  0.000000  0.111111  0.555556  0.333333  0.000000  0.166667  0.000000  0.833333  0.222222  0.000000  0.777778  0.000000  0.722222  0.166667  0.000000  0.111111  0.222222  0.111111  0.277778  0.388889  0.111111  0.555556  0.222222  0.111111  0.277778  0.166667  0.333333  0.222222  0.611111  0.000000  0.222222  0.166667  0.055556  0.277778  0.388889  0.277778  0.166667  0.111111  0.388889  0.333333  0.000000  0.055556  0.000000  0.944444  0.111111  0.888889  0.000000  0.000000  0.777778  0.000000  0.111111  0.111111  0.000000  0.944444  0.000000  0.055556  0.833333  0.055556  0.055556  0.055556  0.222222  0.500000  0.000000  0.277778  0.333333  0.111111  0.000000  0.555556  0.333333  0.000000  0.055556  0.611111 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 1 regular expression--------------------------------------------------------------------------------T[GT]T[GA]A[TGA][CG][GAT][AG][GCT][GT]TCACA[CTA][TA][TA]--------------------------------------------------------------------------------Time  3.14 secs.****************************************************************************************************************************************************************MOTIF  2	width =    8   sites =   2   llr = 24   E-value = 1.5e+004********************************************************************************--------------------------------------------------------------------------------	Motif 2 Description--------------------------------------------------------------------------------Simplified        A  ::::::::pos.-specific     C  a::5::::probability       G  :aa:aaaamatrix            T  :::5::::         bits    2.4 *** ****                 2.1 *** ****                 1.9 *** ****                 1.6 *** ****Information      1.4 *** ****content          1.2 *** ****(17.5 bits)      0.9 ********                 0.7 ********                 0.5 ********                 0.2 ********                 0.0 --------Multilevel           CGGCGGGGconsensus               T    sequence                                                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 sites sorted by position p-value--------------------------------------------------------------------------------Sequence name            Strand  Start   P-value              Site-------------            ------  ----- ---------            --------ilv                          +      5  2.17e-06       GCTC CGGCGGGG TTTTTTGTTAmale                         +     41  5.53e-06 CACAAAGCGA CGGTGGGG CGTAGGGGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 block diagrams--------------------------------------------------------------------------------SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM-------------            ----------------  -------------ilv                               2.2e-06  4_[+2]_93male                              5.5e-06  40_[+2]_57----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 in BLOCKS format--------------------------------------------------------------------------------BL   MOTIF 2 width=8 seqs=2ilv                      (    5) CGGCGGGG  1 male                     (   41) CGGTGGGG  1 //----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 position-specific scoring matrix--------------------------------------------------------------------------------log-odds matrix: alength= 4 w= 8 n= 1764 bayes= 9.783 E= 1.5e+004   -765    235   -765   -765   -765   -765    235   -765   -765   -765    235   -765   -765    135   -765     71   -765   -765    235   -765   -765   -765    235   -765   -765   -765    235   -765   -765   -765    235   -765 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 position-specific probability matrix--------------------------------------------------------------------------------letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+004  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.500000  0.000000  0.500000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  1.000000  0.000000 ----------------------------------------------------------------------------------------------------------------------------------------------------------------	Motif 2 regular expression--------------------------------------------------------------------------------CGG[CT]GGGG--------------------------------------------------------------------------------Time  5.23 secs.****************************************************************************************************************************************************************SUMMARY OF MOTIFS********************************************************************************--------------------------------------------------------------------------------	Combined block diagrams: non-overlapping sites with p-value < 0.0001--------------------------------------------------------------------------------SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM-------------            ----------------  -------------ce1cg                            1.11e-03  16_[-1(7.69e-05)]_28_[+1(1.11e-06)]_23ara                              6.18e-05  57_[+1(3.16e-08)]_29bglr1                            2.40e-03  78_[+1(1.54e-06)]_8crp                              2.56e-03  65_[+1(1.90e-06)]_21cya                              4.00e-03  49_[-1(3.13e-06)]_37deop2                            2.56e-03  9_[+1(2.84e-06)]_31_[-1(8.56e-06)]_27gale                             2.25e-03  44_[+1(1.38e-06)]_42ilv                              2.54e-05  4_[+2(2.17e-06)]_29_[+1(2.42e-05)]_45lac                              4.62e-03  11_[+1(5.51e-06)]_75male                             1.08e-05  16_[+1(3.79e-06)]_5_[+2(5.53e-06)]_57malk                             1.02e-02  60_[-1(4.00e-05)]_26malt                             1.93e-03  40_[-1(1.38e-06)]_46ompa                             6.94e-04  50_[+1(4.43e-07)]_36tnaa                             3.11e-03  73_[+1(5.51e-06)]_13uxu1                             1.47e-02  19_[+1(2.08e-05)]_67pbr322                           2.64e-03  52_[-1(4.58e-06)]_34trn9cat                          2.36e-02  83_[-1(2.42e-05)]_3tdc                              1.29e-02  78_[+1(1.01e-05)]_8--------------------------------------------------------------------------------****************************************************************************************************************************************************************Stopped because nmotifs = 2 reached.********************************************************************************CPU: localhost.localdomain********************************************************************************
meme.crp0.zoops - 源码说明

本页面展示了「EM算法的改进」中的 meme.crp0.zoops 源码文件，采用 ZOOPS 编程语言编写，共 379 行代码。您可以在线阅读完整代码内容，也可以返回资源详情页下载完整源码包进行本地学习和开发。
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