arffloader.java

Java 编写的多种数据挖掘算法 包括聚类、分类、预处理等

/*
 *    This program is free software; you can redistribute it and/or modify
 *    it under the terms of the GNU General Public License as published by
 *    the Free Software Foundation; either version 2 of the License, or
 *    (at your option) any later version.
 *
 *    This program is distributed in the hope that it will be useful,
 *    but WITHOUT ANY WARRANTY; without even the implied warranty of
 *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *    GNU General Public License for more details.
 *
 *    You should have received a copy of the GNU General Public License
 *    along with this program; if not, write to the Free Software
 *    Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
 */

/*
 *    ArffLoader.java
 *    Copyright (C) 2000 Mark Hall
 *
 */

package weka.core.converters;

import weka.core.Instance;
import weka.core.Instances;

import java.io.BufferedReader;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.Reader;

/**
 <!-- globalinfo-start -->
 * Reads a source that is in arff (attribute relation file format) format.
 * <p/>
 <!-- globalinfo-end -->
 *
 * @author Mark Hall ([e-mail])
 * @version $Revision: 1.11 $
 * @see Loader
 */
public class ArffLoader 
  extends AbstractLoader 
  implements FileSourcedConverter, BatchConverter, IncrementalConverter {

  /** for serialization */
  static final long serialVersionUID = 2726929550544048587L;
  
  /** the file extension */
  public static String FILE_EXTENSION = Instances.FILE_EXTENSION;

  /**
   * Holds the determined structure (header) of the data set.
   */
  //@ protected depends: model_structureDetermined -> m_structure;
  //@ protected represents: model_structureDetermined <- (m_structure != null);
  protected transient Instances m_structure = null;

  /** the file */
  protected String m_File = 
    (new File(System.getProperty("user.dir"))).getAbsolutePath();

  /**
   * The reader for the source file.
   */
  private transient Reader m_sourceReader = null;

  /**
   * Returns a string describing this Loader
   * @return a description of the Loader suitable for
   * displaying in the explorer/experimenter gui
   */
  public String globalInfo() {
    return "Reads a source that is in arff (attribute relation file format) "
      +"format. ";
  }

  /**
   * Get the file extension used for arff files
   *
   * @return the file extension
   */
  public String getFileExtension() {
    return FILE_EXTENSION;
  }

  /**
   * Returns a description of the file type.
   *
   * @return a short file description
   */
  public String getFileDescription() {
    return "Arff data files";
  }

  /**
   * Resets the Loader ready to read a new data set
   * 
   * @throws Exception if something goes wrong
   */
  public void reset() throws Exception {

    m_structure = null;
    //    m_sourceReader = null;
    setRetrieval(NONE);
    if (m_File != null) {
      setFile(new File(m_File));
    }
  }

  /**
   * Resets the Loader object and sets the source of the data set to be 
   * the supplied File object.
   *
   * @param file the source file.
   * @exception IOException if an error occurs
   */
  public void setSource(File file) throws IOException {
    
    m_structure = null;
    setRetrieval(NONE);

    if (file == null) {
      throw new IOException("Source file object is null!");
    }

    try {
      setSource(new FileInputStream(file));
    } catch (FileNotFoundException ex) {
      throw new IOException("File not found");
    }
    m_File = file.getAbsolutePath();
  }
  

  /**
   * get the File specified as the source
   *
   * @return the source file
   */
  public File retrieveFile() {
    return new File(m_File);
  }

  /**
   * sets the source File
   *
   * @param file the source file
   * @exception IOException if an error occurs
   */
  public void setFile(File file) throws IOException {
    m_File = file.getAbsolutePath();
    setSource(file);
  }

  /**
   * Resets the Loader object and sets the source of the data set to be 
   * the supplied InputStream.
   *
   * @param in the source InputStream.
   * @exception IOException always thrown.
   */
  public void setSource(InputStream in) throws IOException {
    m_File = null;
    m_sourceReader = new BufferedReader(new InputStreamReader(in));
  }

  /**
   * Determines and returns (if possible) the structure (internally the 
   * header) of the data set as an empty set of instances.
   *
   * @return the structure of the data set as an empty set of Instances
   * @exception IOException if an error occurs
   */
  public Instances getStructure() throws IOException {

    if (m_sourceReader == null) {
      throw new IOException("No source has been specified");
    }

    if (m_structure == null) {
      try {
	m_structure = new Instances(m_sourceReader, 1);
      } catch (Exception ex) {
	throw new IOException("Unable to determine structure as arff.");
      }
    }

    return new Instances(m_structure, 0);
  }

  /**
   * Return the full data set. If the structure hasn't yet been determined
   * by a call to getStructure then method should do so before processing
   * the rest of the data set.
   *
   * @return the structure of the data set as an empty set of Instances
   * @exception IOException if there is no source or parsing fails
   */
  public Instances getDataSet() throws IOException {

    if (m_sourceReader == null) {
      throw new IOException("No source has been specified");
    }
    if (getRetrieval() == INCREMENTAL) {
      throw new IOException("Cannot mix getting Instances in both incremental and batch modes");
    }
    setRetrieval(BATCH);
    if (m_structure == null) {
      getStructure();
    }

    // Read all instances
    // XXX This is inefficient because readInstance creates a new 
    // StringTokenizer each time: This will be fixed once all arff reading
    // is moved out of Instances and into this Loader.
    while (m_structure.readInstance(m_sourceReader));
    
    Instances readIn = new Instances(m_structure);
    /*if (m_File != null) {
	File temp = new File(m_File);
	if (temp.exists()) {
	  setSource(temp);
	}
    }*/
    
    return readIn;
  }

  /**
   * Read the data set incrementally---get the next instance in the data 
   * set or returns null if there are no
   * more instances to get. If the structure hasn't yet been 
   * determined by a call to getStructure then method should do so before
   * returning the next instance in the data set.
   *
   * @return the next instance in the data set as an Instance object or null
   * if there are no more instances to be read
   * @exception IOException if there is an error during parsing
   */
  public Instance getNextInstance() throws IOException {

    if (m_structure == null) {
      getStructure();
    }
    if (getRetrieval() == BATCH) {
      throw new IOException("Cannot mix getting Instances in both incremental and batch modes");
    }
    setRetrieval(INCREMENTAL);

    if (!m_structure.readInstance(m_sourceReader)) {
      // try to reset the loader if the source is a file
      /*if (m_File != null) {
	File temp = new File(m_File);
	if (temp.exists()) {
	  setSource(temp);
	}
      }*/
      return null;
    }
   
    Instance current = m_structure.instance(0);
    m_structure.delete(0);
    if (current == null) {
      try {
        reset();
      } catch (Exception ex) {
        ex.printStackTrace();
      }
    }
    return current;
  }

  /**
   * Main method.
   *
   * @param args should contain the name of an input file.
   */
  public static void main(String [] args) {
    if (args.length > 0) {
      File inputfile;
      inputfile = new File(args[0]);
      try {
	ArffLoader atf = new ArffLoader();
	atf.setSource(inputfile);
	System.out.println(atf.getStructure());
	Instance temp;
	do {
	  temp = atf.getNextInstance();
	  if (temp != null) {
	    System.out.println(temp);
	  }
	} while (temp != null);
      } catch (Exception ex) {
	ex.printStackTrace();
	}
    } else {
      System.err.println("Usage:\n\tArffLoader <file.arff>\n");
    }
  }
}