📄 merger.output

📁 emboss的linux版本的源代码
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<a name="output.1"></a><h3>Output files for usage example </h3><p><h3>File: eclacy.merger</h3><table width="90%"><tr><td bgcolor="#CCFFCC"><pre>######################################### Program: merger# Rundate: Sat 15 Jul 2006 12:00:00# Commandline: merger#    -asequence tembl:eclacy#    -bsequence tembl:eclaca# Align_format: simple# Report_file: eclacy.merger#########################################=======================================## Aligned_sequences: 2# 1: ECLACY# 2: ECLACA# Matrix: EDNAFULL# Gap_penalty: 50.0# Extend_penalty: 5.0## Length: 3173# Identity:     159/3173 ( 5.0%)# Similarity:   159/3173 ( 5.0%)# Gaps:        3014/3173 (95.0%)# Score: 795.0# ##=======================================ECLACY             1 ttccagctgagcgccggtcgctaccattaccagttggtctggtgtcaaaa     50                                                                       ECLACA             1 --------------------------------------------------      0ECLACY            51 ataataataaccgggcaggccatgtctgcccgtatttcgcgtaaggaaat    100                                                                       ECLACA             1 --------------------------------------------------      0ECLACY           101 ccattatgtactatttaaaaaacacaaacttttggatgttcggtttattc    150                                                                       ECLACA             1 --------------------------------------------------      0ECLACY           151 tttttcttttacttttttatcatgggagcctacttcccgtttttcccgat    200                                                                       ECLACA             1 --------------------------------------------------      0ECLACY           201 ttggctacatgacatcaaccatatcagcaaaagtgatacgggtattattt    250                                                                       ECLACA             1 --------------------------------------------------      0ECLACY           251 ttgccgctatttctctgttctcgctattattccaaccgctgtttggtctg    300                                                                       <font color=red>  [Part of this file has been deleted for brevity]</font>                                                                       ECLACA          1310 ctggcgtaaccgccgttaatcagaccgaagtaaacacccagcgtccacgc   1359ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1360 gcggggagtgaataccacgcgaaccggagtggttgttgtcttgtgggaag   1409ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1410 aggcgacctcgcgggcgctttgccaccaccaggcaaagagcgcaacaacg   1459ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1460 gcaggcagcgccaccaggcgagtgtttgataccaggtttcgctatgttga   1509ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1510 actaaccagggcgttatggcggcaccaagcccaccgccgcccatcagagc   1559ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1560 cgcggaccacagccccatcaccagtggcgtgcgctgctgaaaccgccgtt   1609ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1610 taatcaccgaagcatcaccgcctgaatgatgccgatccccaccccaccaa   1659ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1660 gcagtgcgctgctaagcagcagcgcactttgcgggtaaagctcacgcatc   1709ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1710 aatgcaccgacggcaatcagcaacagactgatggcgacactgcgacgttc   1759ECLACY          1501 --------------------------------------------------   1500                                                                       ECLACA          1760 gctgacatgctgatgaagccagcttccggccagcgccagcccgcccatgg   1809ECLACY          1501 -----------------------   1500                                            ECLACA          1810 taaccaccggcagagcggtcgac   1832#---------------------------------------## Conflicts:          ECLACY          ECLACA#              position base   position base Using# ##---------------------------------------</pre></td></tr></table><p><p><h3>File: eclacy.fasta</h3><table width="90%"><tr><td bgcolor="#CCFFCC"><pre>&gt;ECLACY V00295.1 E. coli lacY gene (codes for lactose permease).ttccagctgagcgccggtcgctaccattaccagttggtctggtgtcaaaaataataataaccgggcaggccatgtctgcccgtatttcgcgtaaggaaatccattatgtactatttaaaaaacacaaacttttggatgttcggtttattctttttcttttacttttttatcatgggagcctacttcccgtttttcccgatttggctacatgacatcaaccatatcagcaaaagtgatacgggtattatttttgccgctatttctctgttctcgctattattccaaccgctgtttggtctgctttctgacaaactcgggctgcgcaaatacctgctgtggattattaccggcatgttagtgatgtttgcgccgttctttatttttatcttcgggccactgttacaatacaacattttagtaggatcgattgttggtggtatttatctaggcttttgttttaacgccggtgcgccagcagtagaggcatttattgagaaagtcagccgtcgcagtaatttcgaatttggtcgcgcgcggatgtttggctgtgttggctgggcgctgtgtgcctcgattgtcggcatcatgttcaccatcaataatcagtttgttttctggctgggctctggctgtgcactcatcctcgccgttttactctttttcgccaaaacggatgcgccctcttctgccacggttgccaatgcggtaggtgccaaccattcggcatttagccttaagctggcactggaactgttcagacagccaaaactgtggtttttgtcactgtatgttattggcgtttcctgcacctacgatgtttttgaccaacagtttgctaatttctttacttcgttctttgctaccggtgaacagggtacgcgggtatttggctacgtaacgacaatgggcgaattacttaacgcctcgattatgttctttgcgccactgatcattaatcgcatcggtgggaaaaacgccctgctgctggctggcactattatgtctgtacgtattattggctcatcgttcgccacctcagcgctggaagtggttattctgaaaacgctgcatatgtttgaagtaccgttcctgctggtgggctgctttaaatatattaccagccagtttgaagtgcgtttttcagcgacgatttatctggtctgtttctgcttctttaagcaactggcgatgatttttatgtctgtactggcgggcaatatgtatgaaagcatcggtttccagggcgcttatctggtgctgggtctggtggcgctgggcttcaccttaatttccgtgttcacgcttagcggccccggcccgctttccctgctgcgtcgtcaggtgaatgaagtcgcttaagcaatcaatgtcggatgcggcgcgacgcttatccgaccaacatatcataacggagtgatcgcattgaacatgccaatgaccgaaagaataagagcaggcaagctatttaccgatatgtgcgaaggcttaccggaaaaaagacttcgtgggaaaacgttaatgtatgagtttaatcactcgcatccatcagaagttgaaaaaagagaaagcctgattaaagaaatgtttgccacggtaggggaaaacgcctgggtagaaccgcctgtctatttctcttacggttccaacatccatataggccgcaatttttatgcaaatttcaatttaaccattgtcgatgactacacggtaacaatcggtgataacgtactgattgcacccaacgttactctttccgttacgggacaccctgtacaccatgaattgagaaaaaacggcgagatgtactcttttccgataacgattggcaataacgtctggatcggaagtcatgtggttattaatccaggcgtcaccatcggggataattctgttattggcgcgggtagtatcgtcacaaaagacattccaccaaacgtcgtggcggctggcgttccttgtcgggttattcgcgaaataaacgaccgggataagcactattatttcaaagattataaagttgaatcgtcagtttaaattataaaaattgcctgatacgctgcgcttatcaggcctacaagttcagcgatctacattagccgcatccggcatgaacaaagcgcaggaacaagcgtcgcatcatgcctctttgacccacagctgcggaaaacgtactggtgcaaaacgcagggttatgatcatcagcccaacgacgcacagcgcatgaaatgcccagtccatcaggtaattgccgctgatactacgcagcacgccagaaaaccacggggcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaatagccggttgcacagagtgatcgagcgccagcagcaaacagagcggaaacgcgccgcccagacctaacccacacaccatcgcccacaataccggcaattgcatcggcagccagataaagccgcagaaccccaccagttgtaacaccagcgccagcattaacagtttgcgccgatcctgatggcgagccatagcaggcatcagcaaagctcctgcggcttgcccaagcgtcatcaatgccagtaaggaaccgctgtactgcgcgctggcaccaatctcaatatagaaagcgggtaaccaggcaatcaggctggcgtaaccgccgttaatcagaccgaagtaaacacccagcgtccacgcgcggggagtgaataccacgcgaaccggagtggttgttgtcttgtgggaagaggcgacctcgcgggcgctttgccaccaccaggcaaagagcgcaacaacggcaggcagcgccaccaggcgagtgtttgataccaggtttcgctatgttgaactaaccagggcgttatggcggcaccaagcccaccgccgcccatcagagccgcggaccacagccccatcaccagtggcgtgcgctgctgaaaccgccgtttaatcaccgaagcatcaccgcctgaatgatgccgatccccaccccaccaagcagtgcgctgctaagcagcagcgcactttgcgggtaaagctcacgcatcaatgcaccgacggcaatcagcaacagactgatggcgacactgcgacgttcgctgacatgctgatgaagccagcttccggccagcgccagcccgcccatggtaaccaccggcagagcggtcgac</pre></td></tr></table><p>
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