makenucseq.itable

emboss的linux版本的源代码

<table border cellspacing=0 cellpadding=3 bgcolor="#ccccff">
<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Standard (Mandatory) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>-codonfile</td>
<td>Optional codon usage file. Nucleotide sequences will be created as triplets matching the frequencies in the file, with the end trimmed to be in the correct reading frame.</td>
<td>Codon usage file in EMBOSS data path</td>
<td>&nbsp;</td>
</tr>

<tr>
<td>-amount</td>
<td>Number of sequences created</td>
<td>Integer 1 or more</td>
<td>100</td>
</tr>

<tr>
<td>-length</td>
<td>Length of each sequence</td>
<td>Integer 1 or more</td>
<td>100</td>
</tr>

<tr>
<td>-insert</td>
<td>String that is inserted into sequence</td>
<td>Any string is accepted</td>
<td><i>An empty string is accepted</i></td>
</tr>

<tr>
<td>-start</td>
<td>Start point of inserted sequence</td>
<td>Integer 1 or more</td>
<td>1</td>
</tr>

<tr>
<td>[-outseq]<br>(Parameter 1)</td>
<td>Nucleotide sequence set(s) filename and optional format (output USA)</td>
<td>Writeable sequence(s)</td>
<td><i>&lt;*&gt;</i>.<i>format</i></td>
</tr>

<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Additional (Optional) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td>-useinsert</td>
<td>Do you want to make an insert</td>
<td>Toggle value Yes/No</td>
<td>No</td>
</tr>

<tr bgcolor="#FFFFCC">
<th align="left" colspan=2>Advanced (Unprompted) qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>

<tr>
<td colspan=4>(none)</td>
</tr>

</table>