primersearch.input

emboss的linux版本的源代码

<a name="input.1"></a>
<h3>Input files for usage example </h3>

'tembl:z52466' is a sequence entry in the example nucleic acid database 'tembl'
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<p><h3>File: primers</h3>
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# This is my primer file
D1S243  cacacaggctcacatgcc      gctccagcgtcatggact
D1S468 aattaaccgttttggtcct     gcgacacacacttccc 
D1S2845 ccaaagggtgcttctc        gtggcattccaacctc
D1S1608 gatggcttttggggactatt    cactgagccaagtgacacag
D1S2893 aaaacatcaactctcccctg    ctcaaaccccaataagcctt
D1S2660 cacacatgcacatgcac       agtgacaccagcaggg
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<p><h3>Database entry: tembl:z52466</h3>
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ID   HSA203YC1  standard; DNA; STS; 389 BP.
XX
AC   Z52466;
XX
SV   Z52466.1
XX
DT   18-MAR-1996 (Rel. 47, Created)
DT   23-MAR-1996 (Rel. 47, Last updated, Version 3)
XX
DE   H.sapiens (D1S2660) DNA segment containing (CA) repeat; clone AFMa203yc1;
DE   single read.
XX
KW   CA repeat; dinucleotide repeat; GT repeat; microsatellite DNA;
KW   microsatellite marker; repeat polymorphism; STS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-389
RA   Weissenbach J.;
RT   ;
RL   Submitted (01-SEP-1995) to the EMBL/GenBank/DDBJ databases.
RL   Genethon, B.P. 60, 91002 Evry Cedex France. E-mail:
RL   [e-mail]
XX
RN   [2]
RP   1-389
RX   MEDLINE; 96176476.
RA   Dib C., Faure S., Fizames C., Samson D., Drouot N., Vignal A.,
RA   Millasseau P., Marc S., Hazan J., Seboun E., Lathrop M., Gyapay G.,
RA   Morissette J., Weissenbach J.;
RT   "A comprehensive genetic map of the human genome based on 5,264
RT   microsatellites";
RL   Nature 380:152-154(1996).
XX
CC   full automatic;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..389
FT                   /chromosome="1"
FT                   /db_xref="taxon:9606"
FT                   /note="cloning vector is M13mp18"
FT                   /organism="Homo sapiens"
FT                   /cell_line="CEPH 134702"
FT                   /clone_lib="genomic DNA"
XX
SQ   Sequence 389 BP; 118 A; 124 C; 86 G; 57 T; 4 other;
     agctgtgtgc acacaacatg anggggcaca catgcacatg cacacatgcc cacatgcata        60
     tgcacacaca cacacacaca cacacacaca ttcatgccca agcacgccca ccctcatgtc       120
     tcaccatgtg cacataacac acagtcacat ataccctggc acacatgccc acatgcagac       180
     acgaaacaca ggcccacgnt tncatgcaca caggtatggg cacacatacc atgcacacat       240
     aangacaaat accaggccag acatgatttg cccctgctgg tgtcactgtt aagtgtgaca       300
     gacaagcaga ggacacacac ccacctggga cgcggggctt caggagagag gcagacctaa       360
     tagggcccgg attcggggct ggggaggct                                         389
//
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