restrict.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: hsfau.restrict</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
########################################
# Program: restrict
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: restrict
#    -sequence tembl:hsfau
# Report_format: table
# Report_file: hsfau.restrict
########################################

#=======================================
#
# Sequence: HSFAU     from: 1   to: 518
# HitCount: 54
#
# Minimum cuts per enzyme: 1
# Maximum cuts per enzyme: 2000000000
# Minimum length of recognition site: 4
# Blunt ends allowed
# Sticky ends allowed
# DNA is linear
# Ambiguities allowed
#
#=======================================

  Start     End Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev
     11      14 TaqI        TCGA                 11     13         .         .
     28      25 AciI        CCGC                 25     27         .         .
     36      31 BseYI       CCCAGC               31     35         .         .
     38      41 AciI        CCGC                 38     40         .         .
     44      40 BceAI       ACGGC                25     27         .         .
     71      81 BsiYI       CCNNNNNNNGG          77     74         .         .
     71      74 AciI        CCGC                 71     73         .         .
     73      76 Hin6I       GCGC                 73     75         .         .
     73      76 HhaI        GCGC                 75     73         .         .
     77      81 EcoRII      CCWGG                76     81         .         .
     77      81 BssKI       CCNGG                76     81         .         .
     94      97 TaqI        TCGA                 94     96         .         .
    103     106 HpaII       CCGG                103    105         .         .
    105     108 HaeIII      GGCC                106    106         .         .
    107     111 EcoRII      CCWGG               106    111         .         .
    107     111 BssKI       CCNGG               106    111         .         .
    107     117 BsiYI       CCNNNNNNNGG         113    110         .         .
    122     132 BsiYI       CCNNNNNNNGG         128    125         .         .
    125     135 Hin4I       GAYNNNNNVTC         116    111       148       143
    146     150 BsrI        ACTGG               151    149         .         .
    161     165 BssKI       CCNGG               160    165         .         .
    162     165 HpaII       CCGG                162    164         .         .
    182     186 EcoRII      CCWGG               181    186         .         .
    182     186 BssKI       CCNGG               181    186         .         .
    190     193 Hin6I       GCGC                190    192         .         .
    190     193 HhaI        GCGC                192    190         .         .
    192     195 Hin6I       GCGC                192    194         .         .
    192     195 HhaI        GCGC                194    192         .         .
    197     201 EcoRII      CCWGG               196    201         .         .
    197     201 BssKI       CCNGG               196    201         .         .
    209     212 HaeIII      GGCC                210    210         .         .
    219     222 HaeIII      GGCC                220    220         .         .
    221     231 BsiYI       CCNNNNNNNGG         227    224         .         .
    225     221 BsrI        ACTGG               221    219         .         .
    229     226 AciI        CCGC                226    228         .         .
    236     239 HaeIII      GGCC                237    237         .         .
    248     252 EcoRII      CCWGG               247    252         .         .
    248     252 BssKI       CCNGG               247    252         .         .
    261     264 HaeIII      GGCC                262    262         .         .
    263     266 AciI        CCGC                263    265         .         .
    293     297 EcoRII      CCWGG               292    297         .         .
    293     297 BssKI       CCNGG               292    297         .         .
    296     299 HaeIII      GGCC                297    297         .         .
    335     338 HaeIII      GGCC                336    336         .         .
    380     377 AciI        CCGC                377    379         .         .
    383     380 AciI        CCGC                380    382         .         .
    395     398 HpaII       CCGG                395    397         .         .
    398     401 Hin6I       GCGC                398    400         .         .
    398     401 HhaI        GCGC                400    398         .         .
    405     410 HindII      GTYRAC              407    407         .         .
    408     413 AclI        AACGTT              409    411         .         .
    409     412 MaeII       ACGT                409    411         .         .
    417     427 BsiYI       CCNNNNNNNGG         423    420         .         .
    438     441 HaeIII      GGCC                439    439         .         .

#---------------------------------------
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 54
#---------------------------------------
</pre>
</td></tr></table><p>

<a name="output.2"></a>
<h3>Output files for usage example 2</h3>
<p><h3>File: hsfau.restrict</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
########################################
# Program: restrict
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: restrict
#    -fragments
#    -sequence tembl:hsfau
# Report_format: table
# Report_file: hsfau.restrict
########################################

#=======================================
#
# Sequence: HSFAU     from: 1   to: 518
# HitCount: 54
#
# Minimum cuts per enzyme: 1
# Maximum cuts per enzyme: 2000000000
# Minimum length of recognition site: 4
# Blunt ends allowed
# Sticky ends allowed
# DNA is linear
# Ambiguities allowed
#
#=======================================

  Start     End Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev
     11      14 TaqI        TCGA                 11     13         .         .
     28      25 AciI        CCGC                 25     27         .         .
     36      31 BseYI       CCCAGC               31     35         .         .
     38      41 AciI        CCGC                 38     40         .         .
     44      40 BceAI       ACGGC                25     27         .         .
     71      81 BsiYI       CCNNNNNNNGG          77     74         .         .
     71      74 AciI        CCGC                 71     73         .         .
     73      76 Hin6I       GCGC                 73     75         .         .
     73      76 HhaI        GCGC                 75     73         .         .
     77      81 EcoRII      CCWGG                76     81         .         .
     77      81 BssKI       CCNGG                76     81         .         .
     94      97 TaqI        TCGA                 94     96         .         .
    103     106 HpaII       CCGG                103    105         .         .
    105     108 HaeIII      GGCC                106    106         .         .
    107     111 EcoRII      CCWGG               106    111         .         .
    107     111 BssKI       CCNGG               106    111         .         .
    107     117 BsiYI       CCNNNNNNNGG         113    110         .         .
    122     132 BsiYI       CCNNNNNNNGG         128    125         .         .
    125     135 Hin4I       GAYNNNNNVTC         116    111       148       143
    146     150 BsrI        ACTGG               151    149         .         .
    161     165 BssKI       CCNGG               160    165         .         .
    162     165 HpaII       CCGG                162    164         .         .
    182     186 EcoRII      CCWGG               181    186         .         .
    182     186 BssKI       CCNGG               181    186         .         .


<font color=red>  [Part of this file has been deleted for brevity]</font>

#     39
#     33
#     29
#     20
#     19
#     17
#     16
#     15
#     15
#     14
#     14
#     14
#     12
#     11
#     10
#     10
#     10
#     9
#     9
#     9
#     7
#     7
#     7
#     6
#     5
#     5
#     3
#     3
#     3
#     3
#     3
#     2
#     2
#     2
#     2
#     2
#     2
#     2
#     2
#     1
#     1
#     1
#     1
#     1
#
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 54
#---------------------------------------
</pre>
</td></tr></table><p>

<a name="output.3"></a>
<h3>Output files for usage example 3</h3>
<p><h3>File: hsfau.restrict</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
########################################
# Program: restrict
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: restrict
#    -solofragment
#    -sequence tembl:hsfau
# Report_format: table
# Report_file: hsfau.restrict
########################################

#=======================================
#
# Sequence: HSFAU     from: 1   to: 518
# HitCount: 54
#
# Minimum cuts per enzyme: 1
# Maximum cuts per enzyme: 2000000000
# Minimum length of recognition site: 4
# Blunt ends allowed
# Sticky ends allowed
# DNA is linear
# Ambiguities allowed
#
#=======================================

  Start     End Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev
     11      14 TaqI        TCGA                 11     13         .         .
     28      25 AciI        CCGC                 25     27         .         .
     36      31 BseYI       CCCAGC               31     35         .         .
     38      41 AciI        CCGC                 38     40         .         .
     44      40 BceAI       ACGGC                25     27         .         .
     71      81 BsiYI       CCNNNNNNNGG          77     74         .         .
     71      74 AciI        CCGC                 71     73         .         .
     73      76 Hin6I       GCGC                 73     75         .         .
     73      76 HhaI        GCGC                 75     73         .         .
     77      81 EcoRII      CCWGG                76     81         .         .
     77      81 BssKI       CCNGG                76     81         .         .
     94      97 TaqI        TCGA                 94     96         .         .
    103     106 HpaII       CCGG                103    105         .         .
    105     108 HaeIII      GGCC                106    106         .         .
    107     111 EcoRII      CCWGG               106    111         .         .
    107     111 BssKI       CCNGG               106    111         .         .
    107     117 BsiYI       CCNNNNNNNGG         113    110         .         .
    122     132 BsiYI       CCNNNNNNNGG         128    125         .         .
    125     135 Hin4I       GAYNNNNNVTC         116    111       148       143
    146     150 BsrI        ACTGG               151    149         .         .
    161     165 BssKI       CCNGG               160    165         .         .
    162     165 HpaII       CCGG                162    164         .         .
    182     186 EcoRII      CCWGG               181    186         .         .
    182     186 BssKI       CCNGG               181    186         .         .


<font color=red>  [Part of this file has been deleted for brevity]</font>

# 	70	151	297
# 
# BssKI:
# [CCNGG]
# 	15	21	30	45	51	54
# 	76	226
# 
# EcoRII:
# [CCWGG]
# 	15	30	45	51	75	76
# 	226
# 
# HaeIII:
# [GGCC]
# 	10	17	25	35	39	79
# 	103	104	106
# 
# HhaI:
# [GCGC]
# 	2	75	117	118	206
# 
# Hin4I:
# [GAYNNNNNVTC]
# 	32	116	370
# 
# Hin6I:
# [GCGC]
# 	2	73	117	120	206
# 
# HindII:
# [GTYRAC]
# 	111	407
# 
# HpaII:
# [CCGG]
# 	59	103	123	233
# 
# MaeII:
# [ACGT]
# 	109	409
# 
# TaqI:
# [TCGA]
# 	11	83	424
#
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 54
#---------------------------------------
</pre>
</td></tr></table><p>