complex.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: complex.ujtable</h3>
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<p><h3>File: hs989235.complex</h3>
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Length of window : 100 
jmin : 4 
jmax : 6 
step : 5 
Execution without simulation 
----------------------------------------------------------------------------
|                  |                  |                  |                  |
|     number of    |      name of     |     length of    |      value of    |
|     sequence     |     sequence     |     sequence     |     complexity   |
|                  |                  |                  |                  |
----------------------------------------------------------------------------
         1                    HS989235            495             0.7210 
         2                    AB009602            561             0.6688 
         3                      HSCAD5           3170             0.6921 
         4                         HSD            781             0.6991 
         5                      HSEGL1           3919             0.6618 
         6                       HSFAU            518             0.6739 
         7                      HSFAU1           2016             0.7105 
         8                       HSFOS           6210             0.6681 
         9                       HSEF2           3075             0.6925 
        10                        HSHT           1658             0.7314 
        11                       HSTS1          18596             0.6668 
        12                      HSNFG9          33760             0.6661 
        13                    AB000095           2399             0.6569 
        14                    AB009062            532             0.6465 
        15                     HSFERG1            512             0.5609 
        16                     HSFERG2           1132             0.7217 
        17                    AC004629         116019             0.6478 
        18                    AP000504         100000             0.6611 
        19                    AF129756         184666             0.6562 
        20                    AB000360           2582             0.6710 
        21                       HSHBB          73308             0.6544 
        22                     CEZK637          40699             0.6307 
        23                      PDRHOD           1675             0.6201 
        24                    AAHSP70B           4712             0.7110 
        25                      GMGL01           3400             0.3981 
        26                    GMLLBPS1            852             0.5986 
        27                    GMLLBPS2           1698             0.5225 
        28                       ECLAC           7477             0.7137 
        29                      ECLACA           1832             0.6916 
        30                      ECLACI           1113             0.7480 
        31                      ECLACY           1500             0.6801 
        32                      ECLACZ           3078             0.7278 
        33                      PAAMIB           1212             0.6596 
        34                      PAAMIE           1065             0.6418 
        35                      PAAMIR           2167             0.6562 
        36                      PAAMIS           1130             0.6989 
        37                        MMAM            366             0.7163 
        38                       RNOPS           1493             0.6571 
        39                    RNU68037           1218             0.6381 
        40                   HSA203YC1            389             0.4327 
        41                     HHTETRA           1272             0.3114 
        42                    XLRHODOP           1684             0.7193 
        43                     XL23808           4734             0.7180 
        44                    AF123456           1510             0.5913 
        45                    AF123457           1634             0.7254 
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<p><h3>File: hs989235.fasta</h3>
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<pre>
&gt;HS989235 H45989.1 yo13c02.s1 Soares adult brain N2b5HB55Y Homo sapiens cDNA clone IMAGE:177794 3', mRNA sequence.
ccggnaagctcancttggaccaccgactctcgantgnntcgccgcgggagccggntggan
aacctgagcgggactggnagaaggagcagagggaggcagcacccggcgtgacggnagtgt
gtggggcactcaggccttccgcagtgtcatctgccacacggaaggcacggccacgggcag
gggggtctatgatcttctgcatgcccagctggcatggccccacgtagagtggnntggcgt
ctcggtgctggtcagcgacacgttgtcctggctgggcaggtccagctcccggaggacctg
gggcttcagcttcccgtagcgctggctgcagtgacggatgctcttgcgctgccatttctg
ggtgctgtcactgtccttgctcactccaaaccagttcggcggtccccctgcggatggtct
gtgttgatggacgtttgggctttgcagcaccggccgccgagttcatggtngggtnaagag
atttgggttttttcn
&gt;AB009602 AB009602.1 Schizosaccharomyces pombe mRNA for MET1 homolog, partial cds.
gttcgatgcctaaaataccttcttttgtccctacacagaccacagttttcctaatggctt
tacaccgactagaaattcttgtgcaagcactaattgaaagcggttggcctagagtgttac
cggtttgtatagctgagcgcgtctcttgccctgatcaaaggttcattttctctactttgg
aagacgttgtggaagaatacaacaagtacgagtctctcccccctggtttgctgattactg
gatacagttgtaatacccttcgcaacaccgcgtaactatctatatgaattattttccctt
tattatatgtagtaggttcgtctttaatcttcctttagcaagtcttttactgttttcgac
ctcaatgttcatgttcttaggttgttttggataatatgcggtcagtttaatcttcgttgt
ttcttcttaaaatatttattcatggtttaatttttggtttgtacttgttcaggggccagt
tcattatttactctgtttgtatacagcagttcttttatttttagtatgattttaatttaa
aacaattctaatggtcaaaaa
&gt;HSCAD5 X59796.1 H.sapiens mRNA for cadherin-5
ctccactcacgctcagccctggacggacaggcagtccaacggaacagaaacatccctcag
cccacaggcacgatctgttcctcctgggaagatgcagaggctcatgatgctcctcgccac
atcgggcgcctgcctgggcctgctggcagtggcagcagtggcagcagcaggtgctaaccc
tgcccaacgggacacccacagcctgctgcccacccaccggcgccaaaagagagattggat
ttggaaccagatgcacattgatgaagagaaaaacacctcacttccccatcatgtaggcaa
gatcaagtcaagcgtgagtcgcaagaatgccaagtacctgctcaaaggagaatatgtggg
caaggtcttccgggtcgatgcagagacaggagacgtgttcgccattgagaggctggaccg
ggagaatatctcagagtaccacctcactgctgtcattgtggacaaggacactggcgaaaa
cctggagactccttccagcttcaccatcaaagttcatgacgtgaacgacaactggcctgt
gttcacgcatcggttgttcaatgcgtccgtgcctgagtcgtcggctgtggggacctcagt
catctctgtgacagcagtggatgcagacgaccccactgtgggagaccacgcctctgtcat
gtaccaaatcctgaaggggaaagagtattttgccatcgataattctggacgtattatcac
aataacgaaaagcttggaccgagagaagcaggccaggtatgagatcgtggtggaagcgcg
agatgcccagggcctccggggggactcgggcacggccaccgtgctggtcactctgcaaga
catcaatgacaacttccccttcttcacccagaccaagtacacatttgtcgtgcctgaaga
cacccgtgtgggcacctctgtgggctctctgtttgttgaggacccagatgagccccagaa
ccggatgaccaagtacagcatcttgcggggcgactaccaggacgctttcaccattgagac
aaaccccgcccacaacgagggcatcatcaagcccatgaagcctctggattatgaatacat
ccagcaatacagcttcatagtcgaggccacagaccccaccatcgacctccgatacatgag
ccctcccgcgggaaacagagcccaggtcattatcaacatcacagatgtggacgagccccc
cattttccagcagcctttctaccacttccagctgaaggaaaaccagaagaagcctctgat
tggcacagtgctggccatggaccctgatgcggctaggcatagcattggatactccatccg
caggaccagtgacaagggccagttcttccgagtcacaaaaaagggggacatttacaatga
gaaagaactggacagagaagtctacccctggtataacctgactgtggaggccaaagaact
ggattccactggaacccccacaggaaaagaatccattgtgcaagtccacattgaagtttt
ggatgagaatgacaatgccccggagtttgccaagccctaccagcccaaagtgtgtgagaa
cgctgtccatggccagctggtcctgcagatctccgcaatagacaaggacataacaccacg
aaacgtgaagttcaaattcatcttgaatactgagaacaactttaccctcacggataatca


<font color=red>  [Part of this file has been deleted for brevity]</font>

gagccagttgtcaagaagagcagcagcagcagctcctgtctcctgcaggacagcagcagc
cctgctcactccacgagcacggtggcagcagcagcagcgagcgcaccaccagagggacgg
atgctcattcaggacatcccttccatccccagcagagggcacttggagagcacgtctgat
ttggttgtggactccacctactacagcagtttttaccagccatccctgtatccttactat
aacaacctgtacaactactcccagtaccaaatggcagtggccactgagtcttcctcaagt
gagacagggggtacgtttgtagggtcagccatgaaaaacagccttcgaagcctcccagca
acatacatgtcaagccagtcaggaaaacagtggcagatgaagggaatggagaaccgccat
gccatgagctcccagtaccggatgtgctcctactacccgcccacctcatacctgggccag
ggggttggcagtcccacctgcgtcacacagatactggcctcggaggacaccccctcctac
tcagagtcgaaagcgagagtgttttcgccgcccagcagccaggactcgggcctggggtgc
ctgtcgagcagcgagagcaccaagggagacctggagtgcgagccccaccaagagcccggc
gccttcgcggtgagcccggttcttgagggcgagtaggcgcggcgtcgggcggctgctgcg
cggcgttcactgttgccttgttctgttggggttgcgggggggcgttgggtttcttctttc
cggggcggggggggcacggcggggccgcggccgggccggcggggcggggcggggcgggac
ggggcggggcggagccgcgcgggggccgcagtccgggccggggccgccgtcgggtctcgg
cccgctcccgtcggggcggagcgtccgacgatcggcctccacgaaacgcggtgccgtgat
gtgtttgtagtggttcctcgtaggctccagacgttttctcctcgtatcgccaaattaacg
cgttttgcatattacagttgagtgcctcgacttagattgcaatataagcggccagcaaac
aagtctcaaaaaaaagttacgtgcgtttctgcgagtgttattttgttaagaacggctcac
agtgtcctcttcctgtgttacagaagccaacctgaaatgaaactagtctggaaaaattca
ttgttctctgtagttgcagctgtacctgaaataaaaatgttattgatgactgaaaaaaaa
aaaaaaaaaa
&gt;AF123457 AF123457.1 Toxoplasma gondii enolase (ENO2) mRNA, complete cds.
tctaccgttactcaacttccaacaaaatggtggccatcaaggacatcactgctcgtcaga
tcctcgactcccgaggaaacccgaccgtcgaggttgacttgttgaccgatggcggctgct
tccgtgccgctgtccccagcggcgcatccactggcatctacgaggcgcttgagctccgtg
acaaggaccaaactaagttcatgggcaagggtgtgatgaaggccgtggagaacatccaca
agattatcaagccggcgcttattggcaaggacccgtgcgaccagaagggtattgacaagc
tgatggtcgaggagctcgatggaactaagaacgagtggggctggtgcaagtcgaagctcg
gcgcgaacgcgatcctggccgtctcgatggcttgctgccgcgccggcgctgctgccaagg
gcatgcccctgtacaagtacattgccactttggctggaaacccgacagacaagatggtaa
tgcccgtcccgttcttcaacgtcatcaacggcggctcccacgcaggcaacaaggtcgcga
tgcaggagttcatgatcgcccccgtcggcgcctccacaatccaagaggcgatccagatcg
gcgcggaagtgtaccagcacctgaaggtcgtcattaagaagaagtatggcctcgacgcca
cgaacgtcggcgacgagggtggcttcgcccccaacatcagcggcgccacggaggccctcg
acttgctgatggaggccatcaaggtgtctggtcacgaaggcaaggtcaagattgccgccg
acgtcgccgcttccgagttcttcctccaggacgacaaagtctatgacctagacttcaaga
ctccgaacaacgacaagtcgcaacgcaagactggcgaagagcttcgcaacctgtacaagg
acctgtgccagaagtatcccttcgtgtccatcgaggacccgttcgaccaggacgacttcc
acagctacgctcagctcaccaacgaggttggcgagaaggtccaaatcgtcggcgacgacc
tcctggtcaccaacccgacgcgcattgagaaggccgttcaggagaaagcgtgcaacggcc
tgcttctcaaggtgaaccagattggcacagtcagcgagtctatcgaggcctgccagcttg
cccagaagaacaagtggggcgttatggtttctcaccgctccggtgagactgaggactcct
tcatcgctgacctcgtcgtcggtctccgcaccgggcaaatcaagactggcgccccgtgca
gatccgagcgtctctgcaagtacaaccagctgatgcgtatcgaagagtcgctcggctccg
actgtcagtacgccggcgctggcttccgccatcccaactaagtggaaacggagtttcgac
tacccaactgctcaattggggctgggtggtttgtccactctgcaacaagggcgtgacgag
atcgttgcacatgcaactgccttttttgtgcttggtgggaaggagcactttcgcaggtgc
agcaccgagttgcggttgatgggaatttcggaactgatttgtttcttgcatgccatcacc
gaaggaacgagcagtttcgttgataatattggaaagtcttttgaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaa
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