recoder.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: hsfau.recoder</h3>
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<pre>
########################################
# Program: recoder
# Rundate: Sat 15 Jul 2006 12:00:00
# Commandline: recoder
#    -sequence tembl:hsfau
#    -enzymes EcoRII
# Report_format: table
# Report_file: hsfau.recoder
########################################

#=======================================
#
# Sequence: HSFAU     from: 1   to: 518
# HitCount: 34
#
# KEY:
# Dir: Direction (Rev for reverse complement)
# EnzymeName: Enzyme name
# RS-Pattern: Restriction enzyme recognition site pattern
# Base-Posn: Position of base to be mutated
# AAs: Amino acid. Original sequence(.)After mutation
# Mutation: The base mutation to perform
# 
# Creating silent mutations
#
#=======================================

  Start     End Dir    EnzymeName RS-Pattern Base-Posn    AAs Mutation
     77      81 .      EcoRII     CCWGG             78    P.P     C-&gt;G
     77      81 .      EcoRII     CCWGG             78    P.P     C-&gt;A
     77      81 .      EcoRII     CCWGG             78    P.P     C-&gt;T
     77      81 .      EcoRII     CCWGG             79    R.R     A-&gt;C
     77      81 .      EcoRII     CCWGG             81    R.R     G-&gt;A
    107     111 .      EcoRII     CCWGG            108    A.A     C-&gt;G
    107     111 .      EcoRII     CCWGG            108    A.A     C-&gt;A
    107     111 .      EcoRII     CCWGG            108    A.A     C-&gt;T
    107     111 .      EcoRII     CCWGG            109    R.R     A-&gt;C
    107     111 .      EcoRII     CCWGG            111    R.R     G-&gt;A
    182     186 .      EcoRII     CCWGG            183    S.S     C-&gt;G
    182     186 .      EcoRII     CCWGG            183    S.S     C-&gt;A
    182     186 .      EcoRII     CCWGG            183    S.S     C-&gt;T
    197     201 .      EcoRII     CCWGG            198    P.P     C-&gt;G
    197     201 .      EcoRII     CCWGG            198    P.P     C-&gt;A
    197     201 .      EcoRII     CCWGG            198    P.P     C-&gt;T
    248     252 .      EcoRII     CCWGG            249    P.P     C-&gt;G
    248     252 .      EcoRII     CCWGG            249    P.P     C-&gt;A
    248     252 .      EcoRII     CCWGG            249    P.P     C-&gt;T
    293     297 .      EcoRII     CCWGG            294    P.P     C-&gt;G
    293     297 .      EcoRII     CCWGG            294    P.P     C-&gt;A
    293     297 .      EcoRII     CCWGG            294    P.P     C-&gt;T
     81      77 Rev    EcoRII     CCWGG             79    P.P     T-&gt;G
     81      77 Rev    EcoRII     CCWGG             79    P.P     T-&gt;C
    111     107 Rev    EcoRII     CCWGG            109    P.P     T-&gt;G
    111     107 Rev    EcoRII     CCWGG            109    P.P     T-&gt;C
    186     182 Rev    EcoRII     CCWGG            184    P.P     A-&gt;G
    186     182 Rev    EcoRII     CCWGG            184    P.P     A-&gt;C
    201     197 Rev    EcoRII     CCWGG            199    P.P     A-&gt;G
    201     197 Rev    EcoRII     CCWGG            199    P.P     A-&gt;C
    252     248 Rev    EcoRII     CCWGG            250    P.P     A-&gt;G
    252     248 Rev    EcoRII     CCWGG            250    P.P     A-&gt;C
    297     293 Rev    EcoRII     CCWGG            295    P.P     A-&gt;G
    297     293 Rev    EcoRII     CCWGG            295    P.P     A-&gt;C

#---------------------------------------
#---------------------------------------

#---------------------------------------
# Total_sequences: 1
# Total_hitcount: 34
#---------------------------------------
</pre>
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