est2genome.comment

来自「emboss的linux版本的源代码」· COMMENT 代码 · 共 25 行

<h3>Thu, 29 Mar 2001</h3>

I found est2genome having problems finding very short exons with the
default parameters.

<p>

With the folowing changes it detects also a 14bp exon correctly:
<p>

<pre>
mismatch 1 -> 3
intronpenalty 40 -> 20
splicepenalty 20 -> 10
minscore 30 -> 10
</pre>

<pre>
Dr. David Bauer
GenProfile AG, Max-Delbrueck-Center, Erwin-Negelein-Haus 
Robert-Roessle-Str. 10, D-13125 Berlin, Germany
[e-mail], Tel:[phone], FAX:[phone]
</pre>