remap.output

emboss的linux版本的源代码

<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: eclac.remap </h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
ECLAC
E.coli lactose operon with lacI, lacZ, lacY and lacA genes.

                                                        BssKI
                 TaqI                 AciI              Ksp632I
                 \                    \                 \
          gacaccatcgaatggcgcaaaacctttcgcggtatggcatgatagcgcccggaagagagt
                   10        20        30        40        50        60        
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ctgtggtagcttaccgcgttttggaaagcgccataccgtactatcgcgggccttctctca
                   /                    /                  / /
                   TaqI                 AciI               | BssKI 
                                                           Ksp632I


# Enzymes that cut  Frequency	Isoschizomers
      AciI	    1	
     BssKI	    1	
   Ksp632I	    1	Bsu6I
      TaqI	    1	



# Enzymes which cut less frequently than the MINCUTS criterion
# Enzymes &lt; MINCUTS Frequency	Isoschizomers



# Enzymes which cut more frequently than the MAXCUTS criterion
# Enzymes &gt; MAXCUTS Frequency	Isoschizomers



# Enzymes that do not cut




# No. of cutting enzymes which do not match the
# SITELEN, BLUNT, STICKY, COMMERCIAL, AMBIGUOUS citeria

0

</pre>
</td></tr></table><p>

<a name="output.2"></a>
<h3>Output files for usage example 2</h3>
<p><h3>File: eclac.remap</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
ECLAC
E.coli lactose operon with lacI, lacZ, lacY and lacA genes.

                                                      Hin6I
                 TaqI                                 | HhaI
                 |  BsiYI                             | BssKI
                 |  |   Hin6I                         | Ksp632I
                 |  |   | HhaI        AciI            | | HpaII 
                 \  \   \ \           \               \ \ \
          gacaccatcgaatggcgcaaaacctttcgcggtatggcatgatagcgcccggaagagagt
                   10        20        30        40        50        60        
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ctgtggtagcttaccgcgttttggaaagcgccataccgtactatcgcgggccttctctca
                 / /    / /             /             / /  ///
                 | TaqI | Hin6I         AciI          | |  ||BssKI 
                 BsiYI  HhaI                          | |  |HpaII  
                                                      | |  Ksp632I
                                                      | Hin6I
                                                      HhaI


# Enzymes that cut  Frequency	Isoschizomers
      AciI	    1	
     BsiYI	    1	Bsc4I
     BssKI	    1	
      HhaI	    2	
     Hin6I	    2	HinP1I,HspAI
     HpaII	    1	BsiSI
   Ksp632I	    1	Bsu6I
      TaqI	    1	



# Enzymes which cut less frequently than the MINCUTS criterion
# Enzymes &lt; MINCUTS Frequency	Isoschizomers



# Enzymes which cut more frequently than the MAXCUTS criterion
# Enzymes &gt; MAXCUTS Frequency	Isoschizomers



# Enzymes that do not cut

AclI      BamHI     BceAI     BseYI     BsrI      ClaI      EcoRI     EcoRII    
HaeIII    Hin4I     HindII    HindIII   KpnI      MaeII     NotI      


# No. of cutting enzymes which do not match the
# SITELEN, BLUNT, STICKY, COMMERCIAL, AMBIGUOUS citeria

0

</pre>
</td></tr></table><p>

<a name="output.3"></a>
<h3>Output files for usage example 3</h3>
<p><h3>File: eclac.remap</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
ECLAC
E.coli lactose operon with lacI, lacZ, lacY and lacA genes.

                                                      HspAI
                                                      Hin6I 
                 TaqI                                 HinP1I
                 |  BsiYI                             | HhaI 
                 |  Bsc4I                             | Bsu6I
                 |  |   HspAI                         | BssKI 
                 |  |   Hin6I                         | Ksp632I
                 |  |   HinP1I                        | | HpaII 
                 |  |   | HhaI        AciI            | | BsiSI 
                 \  \   \ \           \               \ \ \
          gacaccatcgaatggcgcaaaacctttcgcggtatggcatgatagcgcccggaagagagt
                   10        20        30        40        50        60        
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ctgtggtagcttaccgcgttttggaaagcgccataccgtactatcgcgggccttctctca
                 / /    / /             /             / /  ///
                 | TaqI | HinP1I        AciI          | |  ||BssKI 
                 Bsc4I  | Hin6I                       | |  |BsiSI  
                 BsiYI  | HspAI                       | |  |HpaII  
                        HhaI                          | |  Ksp632I
                                                      | |  Bsu6I
                                                      | HinP1I
                                                      | Hin6I 
                                                      | HspAI
                                                      HhaI


# Enzymes that cut  Frequency
      AciI	    1	
     Bsc4I	    1	
     BsiSI	    1	
     BsiYI	    1	
     BssKI	    1	
     Bsu6I	    1	
      HhaI	    2	
     Hin6I	    2	
    HinP1I	    2	
     HpaII	    1	
     HspAI	    2	
   Ksp632I	    1	
      TaqI	    1	



# Enzymes which cut less frequently than the MINCUTS criterion
# Enzymes &lt; MINCUTS Frequency



# Enzymes which cut more frequently than the MAXCUTS criterion
# Enzymes &gt; MAXCUTS Frequency



# Enzymes that do not cut

AclI      BamHI     BceAI     Bse1I     BseYI     BshI      BsrI      ClaI      
EcoRI     EcoRII    HaeIII    Hin4I     HindII    HindIII   HpyCH4IV  KpnI      
MaeII     NotI      


# No. of cutting enzymes which do not match the
# SITELEN, BLUNT, STICKY, COMMERCIAL, AMBIGUOUS citeria

0

</pre>
</td></tr></table><p>

<a name="output.4"></a>
<h3>Output files for usage example 4</h3>
<p><h3>File: eclac.remap</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
ECLAC
E.coli lactose operon with lacI, lacZ, lacY and lacA genes.

                                                                  Ksp632I
                                                        &gt;.........====
                                                          HpaII
                                                          &gt;===
                        HhaI                             BssKI
                        ==&gt;=                            &gt;=====
                 TaqI   Hin6I                         HhaI
                 &gt;===   &gt;===                          ==&gt;=
              BsiYI                      AciI         Hin6I
              ======&gt;====             &gt;..====         &gt;===
          gacaccatcgaatggcgcaaaacctttcgcggtatggcatgatagcgcccggaagagagt
                   10        20        30        40        50        60        
          ----:----|----:----|----:----|----:----|----:----|----:----|
          ctgtggtagcttaccgcgttttggaaagcgccataccgtactatcgcgggccttctctca
              ====&lt;======                &lt;===         ===&lt;
              BsiYI                      AciI         Hin6I
                 ===&lt;   ===&lt;                          =&lt;==  &lt;.....====
                 TaqI   Hin6I                         HhaI        Ksp632I
                        =&lt;==                             =====&lt;
                        HhaI                             BssKI
                                                          ===&lt;
                                                          HpaII


# Enzymes that cut  Frequency	Isoschizomers
      AciI	    1	
     BsiYI	    1	Bsc4I
     BssKI	    1	
      HhaI	    2	
     Hin6I	    2	HinP1I,HspAI
     HpaII	    1	BsiSI
   Ksp632I	    1	Bsu6I
      TaqI	    1	



# Enzymes which cut less frequently than the MINCUTS criterion
# Enzymes &lt; MINCUTS Frequency	Isoschizomers



# Enzymes which cut more frequently than the MAXCUTS criterion
# Enzymes &gt; MAXCUTS Frequency	Isoschizomers



# Enzymes that do not cut

AclI      BamHI     BceAI     BseYI     BsrI      ClaI      EcoRI     EcoRII    
HaeIII    Hin4I     HindII    HindIII   KpnI      MaeII     NotI      


# No. of cutting enzymes which do not match the
# SITELEN, BLUNT, STICKY, COMMERCIAL, AMBIGUOUS citeria

0

</pre>
</td></tr></table><p>