garnier.input

emboss的linux版本的源代码

<a name="input.1"></a>
<h3>Input files for usage example </h3>

'tsw:amic_pseae' is a sequence entry in the example protein database 'tsw'
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<p><h3>Database entry: tsw:amic_pseae</h3>
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ID   AMIC_PSEAE     STANDARD;      PRT;   384 AA.
AC   P27017;
DT   01-AUG-1992 (Rel. 23, Created)
DT   01-DEC-1992 (Rel. 24, Last sequence update)
DT   15-DEC-1998 (Rel. 37, Last annotation update)
DE   ALIPHATIC AMIDASE EXPRESSION-REGULATING PROTEIN.
GN   AMIC.
OS   Pseudomonas aeruginosa.
OC   Bacteria; Proteobacteria; gamma subdivision; Pseudomonas group;
OC   Pseudomonas.
RN   [1]
RP   SEQUENCE FROM N.A., AND SEQUENCE OF 1-18.
RC   STRAIN=PAC;
RX   MEDLINE; 91317707.
RA   WILSON S.A., DREW R.E.;
RT   "Cloning and DNA sequence of amiC, a new gene regulating expression
RT   of the Pseudomonas aeruginosa aliphatic amidase, and purification of
RT   the amiC product.";
RL   J. Bacteriol. 173:4914-4921(1991).
RN   [2]
RP   X-RAY CRYSTALLOGRAPHY.
RX   MEDLINE; 92106343.
RA   WILSON S.A., CHAYEN N.E., HEMMINGS A.M., DREW R.E., PEARL L.H.;
RT   "Crystallization of and preliminary X-ray data for the negative
RT   regulator (AmiC) of the amidase operon of Pseudomonas aeruginosa.";
RL   J. Mol. Biol. 222:869-871(1991).
RN   [3]
RP   X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS).
RX   MEDLINE; 95112789.
RA   PEARL L.H., O'HARA B., DREW R.E., WILSON S.A.;
RT   "Crystal structure of AmiC: the controller of transcription
RT   antitermination in the amidase operon of Pseudomonas aeruginosa.";
RL   EMBO J. 13:5810-5817(1994).
CC   -!- FUNCTION: NEGATIVELY REGULATES THE EXPRESSION OF THE ALIPHATIC
CC       AMIDASE OPERON. AMIC FUNCTIONS BY INHIBITING THE ACTION OF AMIR
CC       AT THE PROTEIN LEVEL. IT BINDS TO AMIR. IT EXHIBITS PROTEIN KINASE
CC       ACTIVITY.
CC   -!- SUBUNIT: HOMODIMER.
CC   -!- DOMAIN: CONSISTS OF TWO BETA-ALPHA-BETA DOMAINS WITH A CENTRAL
CC       CLEFT IN WHICH THE AMIDE BINDS.
CC   --------------------------------------------------------------------------
CC   This SWISS-PROT entry is copyright. It is produced through a collaboration
CC   between  the Swiss Institute of Bioinformatics  and the  EMBL outstation -
CC   the European Bioinformatics Institute.  There are no  restrictions on  its
CC   use  by  non-profit  institutions as long  as its content  is  in  no  way
CC   modified and this statement is not removed.  Usage  by  and for commercial
CC   entities requires a license agreement (See http://www.isb-sib.ch/announce/
CC   or send an email to [e-mail]).
CC   --------------------------------------------------------------------------
DR   EMBL; X13776; CAA32024.1; -.
DR   PIR; A40359; A40359.
DR   PDB; 1PEA; 03-APR-96.
KW   Transferase; Kinase; Repressor; 3D-structure.
FT   INIT_MET      0      0
SQ   SEQUENCE   384 AA;  42704 MW;  68FF861F CRC32;
     GSHQERPLIG LLFSETGVTA DIERSHAYGA LLAVEQLNRE GGVGGRPIET LSQDPGGDPD
     RYRLCAEDFI RNRGVRFLVG CYMSHTRKAV MPVVERADAL LCYPTPYEGF EYSPNIVYGG
     PAPNQNSAPL AAYLIRHYGE RVVFIGSDYI YPRESNHVMR HLYRQHGGTV LEEIYIPLYP
     SDDDLQRAVE RIYQARADVV FSTVVGTGTA ELYRAIARRY GDGRRPPIAS LTTSEAEVAK
     MESDVAEGQV VVAPYFSSID TPASRAFVQA CHGFFPENAT ITAWAEAAYW QTLLLGRAAQ
     AAGNWRVEDV QRHLYDIDID APQGPVRVER QNNHSRLSSR IAEIDARGVF QVRWQSPEPI
     RPDPYVVVHN LDDWSASMGG GPLP
//
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